CuGenDBv2

Gene ID	CmoCh02G004890
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	Cmo_Chr02:2675403..2676912
RNA-Seq Expression	CmoCh02G004890
Synteny	CmoCh02G004890
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR007644 - RNA polymerase, beta subunit, protrusion IPR015712 - DNA-directed RNA polymerase, subunit 2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AHM89028.1 RNA polymerase beta subunit [Lagenaria siceraria]

1.1e-75

97.37

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]

1.1e-75

97.37

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

AHM90682.1 RNA polymerase beta subunit [Lagenaria siceraria]

1.1e-75

97.37

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]

1.1e-75

97.37

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

YP_009753166.1 RNA polymerase subunit beta [Trichosanthes truncata]

1.1e-75

97.37

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LDX8 DNA-directed RNA polymerase subunit beta

5.2e-76

97.37

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

A0A2Z2CGF9 DNA-directed RNA polymerase subunit beta

5.2e-76

97.37

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

A0A6H0ETN6 DNA-directed RNA polymerase subunit beta

5.2e-76

97.37

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

A0A6M3RVI4 DNA-directed RNA polymerase subunit beta

5.2e-76

97.37

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

X2F5U4 DNA-directed RNA polymerase subunit beta

5.2e-76

97.37

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

SwissProt top hits

e value

%identity

Alignment

Q09X25 DNA-directed RNA polymerase subunit beta

3.1e-73

91.45

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        ML GGNE +STIPGFNQIQFEGFCRFID GLTEEL KFPKIEDTDQEIEFQLFVETY+LVEPLIKERDAVYESLTYSSELYVSAGLIWKT RDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNG+YRIVI+QILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

Q0ZJ28 DNA-directed RNA polymerase subunit beta

4.0e-73

91.45

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        M  GGNE MSTIPGFNQIQFEGFCRFID GLTEEL KFPKIEDTDQEIEFQLFVETY+LVEPLIKERDAVYESLTYSSELYVSAGLIWKT RDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNGLYRIVI+QILQSPGIYYRSELDHNGIS   GT +S
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

Q49L06 DNA-directed RNA polymerase subunit beta

2.3e-73

91.45

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLG GNE MSTIPGFNQIQFEGFCRFID GLTEEL KFPKIEDTDQEIEFQLFVETY+LVEPLIKERDAVYESLTYSSELYVSAGLIWKT RDMQEQT+F
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNG+YRIVI+QILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

Q4VZP1 DNA-directed RNA polymerase subunit beta

7.0e-78

96.71

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Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLGGGNERMSTIP FNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

Q8S8X9 DNA-directed RNA polymerase subunit beta

1.5e-72

90.79

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLG GNE +STIPGFNQIQFEGFCRFID GLTEEL KFPKIEDTDQEIEFQLFVETY+LVEPLIKERDAVYESLTYSSELYVSAGLIWK  RDMQEQTIF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNG+YRIVI+QILQSPGIYYRSELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

3.4e-67

84.87

Show/hide

Query:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF
        MLG   E  S IPGFNQIQFEGF RFID GL EEL+KFPKIED D EIEFQLFVETY+LVEPLIKERDAVYESLTYSSELYVSAGLIWKT R+MQEQ IF
Subjt:  MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIF

Query:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS
        IGNIPLMNSLGTSIVNG+YRIVI+QILQSPGIYY+SELDHNGIS   GT IS
Subjt:  IGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS---GTCIS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTTGGGGGTGGAAATGAGAGAATGTCTACAATACCTGGGTTTAATCAGATACAATTTGAAGGGTTTTGTAGGTTCATTGATCATGGCTTAACAGAAGAACTTTCTAA
GTTTCCAAAAATTGAAGATACAGATCAAGAAATTGAATTTCAATTATTTGTGGAAACATATAAATTGGTAGAACCATTGATAAAAGAAAGAGATGCTGTCTATGAATCAC
TCACATATTCTTCTGAATTATACGTATCCGCAGGATTAATTTGGAAAACCCGTAGGGATATGCAAGAACAAACAATTTTTATTGGAAACATTCCTCTAATGAATTCCCTG
GGAACTTCTATAGTAAATGGACTATACAGAATTGTGATCAGTCAAATATTGCAAAGCCCCGGTATCTATTACCGGTCAGAATTGGACCATAACGGAATTTCGGGGACATG
CATCTCTTTAACTGAACTGCAAGATAGTGAGTAG

mRNA sequence

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Protein sequence

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MLGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGNIPLMNSL
GTSIVNGLYRIVISQILQSPGIYYRSELDHNGISGTCISLTELQDSE

CmoCh02G004890 (gene) of Cucurbita moschata (Rifu) v1 genome