CuGenDBv2

Gene ID	CmoCh02G005730
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase
Genome location	Cmo_Chr02:3351001..3354759
RNA-Seq Expression	CmoCh02G005730
Synteny	CmoCh02G005730
Gene Ontology terms	GO:0016874 - ligase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605258.1 hypothetical protein SDJN03_02575, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-82

98.31

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Query:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSD NDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK ETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
Subjt:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKTKRKKSKSSGI+TVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

KAG7035221.1 hypothetical protein SDJN02_02016, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.6e-83

98.88

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Query:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSD NDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK ETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
Subjt:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

XP_022947715.1 uncharacterized protein LOC111451498 [Cucurbita moschata]

1.9e-84

100

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Query:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
Subjt:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

XP_023006926.1 uncharacterized protein LOC111499570 [Cucurbita maxima]

5.7e-81

96.07

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Query:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSDPNDTDSDAPEEFTAEQGIQQDEEIRK+QKESSARVVREGKERRRQWAEKKTPR SKK ETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
Subjt:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKT+R+KSKSSGIETVLLN RAPSQC QNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

XP_023533260.1 uncharacterized protein LOC111795202 [Cucurbita pepo subsp. pepo]

7.4e-81

96.63

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Query:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSDPNDTDSDAPEEFTAEQGIQQDEEI KVQKESSARVVREGKERRRQWAEKKTPR SKK ETVEDVAETPRH+DQVSKLGML SNLVQLLAEREKQVFS
Subjt:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKTKR+KSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM07 Uncharacterized protein

2.9e-67

81.46

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Query:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQKES ARV+REGKERRR WAEKKTPR SKK E VED+AE PR++D++SKLG LPSN+VQLL +REKQVFS
Subjt:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SD GDEKPA K K KRKK+KSSGIETVLLNER PS CLQNSLEFLKKRKMN+ RSS+VL N NQA RLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

A0A5A7TWK6 Uncharacterized protein

1.4e-64

80.45

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Query:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQ ES ARV+REGKERRR WAEKKTPR SKK E VED+AE PR++D+VSKLG LPSN+VQLL +REKQVFS
Subjt:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSK-SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SD GDEKPA K K KRKK+K SSGIETVLL+ER PS CLQNSLEFLKKRKMN+ RSS+VL+N NQA RLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSK-SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

A0A6J1DXW1 uncharacterized protein LOC111025162

7.5e-71

87.01

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Query:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSD  DTDSDAPEEFTAEQGIQQD+EI KVQ ES ARVVREGKERRR WAEKKTPR SKK ETVEDVAE P H DQ SKLGMLPSNLVQLLA+REKQVFS
Subjt:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTK
        SDPGDEKPAAK KTKRKK+KSSGIETV+LN+R P+QCLQNS+EFLKKRKMNIPRSSSVLDN NQALR LSSSGLLTK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTK

A0A6J1G7P4 uncharacterized protein LOC111451498

9.1e-85

100

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Query:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
Subjt:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

A0A6J1KZ49 uncharacterized protein LOC111499570

2.7e-81

96.07

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Query:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSDPNDTDSDAPEEFTAEQGIQQDEEIRK+QKESSARVVREGKERRRQWAEKKTPR SKK ETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
Subjt:  MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKT+R+KSKSSGIETVLLN RAPSQC QNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G37090.1 unknown protein

7.0e-29

46.45

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Query:  MSD--PNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVA--ETPRHNDQ-VSKLGMLPSNLVQLLAERE
        MSD    D+DSDAPEE T EQ   ++E + K+Q+E+  RV RE KERR+  AE+ T R S+K E +EDV   E P  N + ++  G L  +++  LAERE
Subjt:  MSD--PNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVA--ETPRHNDQ-VSKLGMLPSNLVQLLAERE

Query:  KQVFSSDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        KQ   SD  +E+       ++KK KSSGIETV+  E  P +CL+  L+FLK R+  +PRSSSV+ NS QALRL + + L  K+
Subjt:  KQVFSSDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

AT4G37090.2 unknown protein

1.3e-27

46.45

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Query:  MSD--PNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVA--ETPRHNDQ-VSKLGMLPSNLVQLLAERE
        MSD    D+DSDAPEE T EQ   ++E + K+Q+E+  RV RE KERR+  AE+ T R S+K E +EDV   E P  N + ++  G L  +++  LAERE
Subjt:  MSD--PNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVA--ETPRHNDQ-VSKLGMLPSNLVQLLAERE

Query:  KQVFSSDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        KQ   SD  +E+       ++KK KSSGIETV+  E  P +CL+  L+FLK R+  +PRSSSV+ NS QALRL + + L  K+
Subjt:  KQVFSSDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

Sequences

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CDS sequence

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ATGTCGGACCCAAACGATACGGATTCCGACGCCCCCGAAGAGTTCACCGCCGAGCAGGGAATACAGCAGGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAGCGCTAG
GGTTGTCCGTGAAGGTAAAGAACGTCGTAGACAGTGGGCCGAAAAGAAAACACCACGCGCATCTAAAAAAAGCGAAACTGTCGAAGATGTAGCAGAAACCCCTAGACACA
ATGATCAAGTTAGCAAGTTGGGAATGCTTCCCAGTAATCTTGTCCAACTGCTTGCCGAGCGTGAGAAACAAGTTTTCTCATCAGACCCAGGCGACGAAAAGCCTGCAGCT
AAATCAAAAACAAAGAGGAAGAAAAGCAAAAGCTCTGGGATTGAAACGGTTCTTTTAAACGAGAGAGCACCATCTCAATGCTTACAGAACTCATTGGAATTTTTGAAGAA
AAGGAAGATGAATATTCCAAGGTCATCATCGGTTCTCGACAATTCTAACCAAGCGTTACGCCTTCTTTCTTCATCGGGCCTTTTAACTAAGAAATAG

mRNA sequence

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CTCAAAAGCGCACAACTCTTCCTCCTTCAAGAGTTTCTTGAAATCCCGGACCCAAAAACCTCACAGAAACCCTAAAAGGAGAGTTTGTAATCAGATGTCGGACCCAAACG
ATACGGATTCCGACGCCCCCGAAGAGTTCACCGCCGAGCAGGGAATACAGCAGGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAGCGCTAGGGTTGTCCGTGAAGGT
AAAGAACGTCGTAGACAGTGGGCCGAAAAGAAAACACCACGCGCATCTAAAAAAAGCGAAACTGTCGAAGATGTAGCAGAAACCCCTAGACACAATGATCAAGTTAGCAA
GTTGGGAATGCTTCCCAGTAATCTTGTCCAACTGCTTGCCGAGCGTGAGAAACAAGTTTTCTCATCAGACCCAGGCGACGAAAAGCCTGCAGCTAAATCAAAAACAAAGA
GGAAGAAAAGCAAAAGCTCTGGGATTGAAACGGTTCTTTTAAACGAGAGAGCACCATCTCAATGCTTACAGAACTCATTGGAATTTTTGAAGAAAAGGAAGATGAATATT
CCAAGGTCATCATCGGTTCTCGACAATTCTAACCAAGCGTTACGCCTTCTTTCTTCATCGGGCCTTTTAACTAAGAAATAGCATTTTTTCTTGTTTGTTTCTAAAGCGAT
TATTGGGTTTCTGTCAGCTTCAACAGGATAATGTACAATGTATTTGAGATTTTAAGTTCAAGACTGATGCAACATGGAGAGTAAAAAAGTTCATTGATTTCTTATAGTGG
GCATAGTCTCATAGCCACATAATTGAAAATGATGGGAGCAGTAAATGTTAGTGAATGAATGATTTTATTATGCAGTAA

Protein sequence

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MSDPNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKSETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAA
KSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

CmoCh02G005730 (gene) of Cucurbita moschata (Rifu) v1 genome