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CmoCh02G006380 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G006380
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionGamma-secretase subunit PEN-2
Genome locationCmo_Chr02:3972706..3976611
RNA-Seq ExpressionCmoCh02G006380
SyntenyCmoCh02G006380
Gene Ontology termsGO:0007219 - Notch signaling pathway (biological process)
GO:0005798 - Golgi-associated vesicle (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0070765 - gamma-secretase complex (cellular component)
InterPro domainsIPR019379 - Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605326.1 putative gamma-secretase subunit PEN-2, partial [Cucurbita argyrosperma subsp. sororia]9.2e-71100Show/hide
Query:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
        MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
Subjt:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI

Query:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLT
        ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLT
Subjt:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLT

XP_022931973.1 probable gamma-secretase subunit PEN-2 [Cucurbita moschata]8.3e-6490.58Show/hide
Query:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
        ME+SQN N+NPN NP RIQN VSS IA LWPTID SLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLR SHSFPRIRPYIVGSAIGFA+FMAI
Subjt:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI

Query:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
        ISSWALTF+IGGERLFGPVW+KLVMYNLADKLGLTGWS
Subjt:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS

XP_022946973.1 probable gamma-secretase subunit PEN-2 [Cucurbita moschata]3.4e-73100Show/hide
Query:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
        MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
Subjt:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI

Query:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
        ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
Subjt:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS

XP_023007265.1 probable gamma-secretase subunit PEN-2 [Cucurbita maxima]3.2e-7197.83Show/hide
Query:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
        MESSQNPNT PNSNPNRIQNPVSSQIAALWPTIDASLGLS EESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFA+FMAI
Subjt:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI

Query:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
        ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
Subjt:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS

XP_023532347.1 probable gamma-secretase subunit PEN-2 [Cucurbita pepo subsp. pepo]2.4e-7197.83Show/hide
Query:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
        MESS NPNTNPNSNP RIQNPVSSQIAALWPTID SLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
Subjt:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI

Query:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
        ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
Subjt:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS

TrEMBL top hitse value%identityAlignment
A0A6J1DR09 probable gamma-secretase subunit PEN-29.9e-6387.68Show/hide
Query:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
        ME SQNPNTNP        NPVSS IAALWPTIDASLGLSEEESVSYAR FYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFA+FMAI
Subjt:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI

Query:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
        +SSWALTF+IGGERLFGPVW+KLVMYN+ADKLGLTGW+
Subjt:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS

A0A6J1F097 probable gamma-secretase subunit PEN-24.0e-6490.58Show/hide
Query:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
        ME+SQN N+NPN NP RIQN VSS IA LWPTID SLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLR SHSFPRIRPYIVGSAIGFA+FMAI
Subjt:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI

Query:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
        ISSWALTF+IGGERLFGPVW+KLVMYNLADKLGLTGWS
Subjt:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS

A0A6J1G5B2 probable gamma-secretase subunit PEN-21.6e-73100Show/hide
Query:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
        MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
Subjt:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI

Query:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
        ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
Subjt:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS

A0A6J1I943 probable gamma-secretase subunit PEN-24.9e-6289.13Show/hide
Query:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
        ME+SQN N+N N NP RIQN VSS IA LWPTID SLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLR S SFPRIRPYIVGSAIGFA+FMAI
Subjt:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI

Query:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
        ISSWALTF+IGGERLFGPVW+KLVMYNLADKLGLTGWS
Subjt:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS

A0A6J1L2H7 probable gamma-secretase subunit PEN-21.5e-7197.83Show/hide
Query:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI
        MESSQNPNT PNSNPNRIQNPVSSQIAALWPTIDASLGLS EESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFA+FMAI
Subjt:  MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAI

Query:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
        ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS
Subjt:  ISSWALTFSIGGERLFGPVWNKLVMYNLADKLGLTGWS

SwissProt top hitse value%identityAlignment
Q5G235 Gamma-secretase subunit PEN-23.9e-0835.11Show/hide
Query:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFP------RIRPYIVGSAIGFAIFMAIISSWALTFSIGGERLFGPVWNKLVMY
        +S EE ++  R++Y  GFA LPFLW VN F+F+   R++   P      +I+ Y+  SA+GF +++ ++S+W   F I     + P W  L  Y
Subjt:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFP------RIRPYIVGSAIGFAIFMAIISSWALTFSIGGERLFGPVWNKLVMY

Q6QI68 Gamma-secretase subunit PEN-21.5e-0732.97Show/hide
Query:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSF---PRIRPYIVGSAIGFAIFMAIISSWALTFSIGGERLFGPVWNKLVMY
        +S EE ++  R++Y  GFA LPFLW VN F+F+     + ++    +I+ Y+  SA+GF  ++ ++++W   F I     + P W  L  Y
Subjt:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSF---PRIRPYIVGSAIGFAIFMAIISSWALTFSIGGERLFGPVWNKLVMY

Q9CQR7 Gamma-secretase subunit PEN-21.1e-0735.11Show/hide
Query:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFP------RIRPYIVGSAIGFAIFMAIISSWALTFSIGGERLFGPVWNKLVMY
        +S EE ++  R++Y  GFA LPFLW VN F+F+   R++   P      +I+ Y+  SA+GF  ++ I+++W   F I     + P W  L  Y
Subjt:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFP------RIRPYIVGSAIGFAIFMAIISSWALTFSIGGERLFGPVWNKLVMY

Q9FY84 Probable gamma-secretase subunit PEN-21.8e-4868.94Show/hide
Query:  QNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAIISSW
        +N N NPN NPN +   +SS  A +WPTID  LGL+EE SV YARRFYKFGFALLP+LW VNCFYFWPVLR S +FP+IR Y+V SAIGF++F A++S+W
Subjt:  QNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAIISSW

Query:  ALTFSIGGERLFGPVWNKLVMYNLADKLGLTG
        ALTFSIGGE+LFGP+++KLVMYN+AD+LGL+G
Subjt:  ALTFSIGGERLFGPVWNKLVMYNLADKLGLTG

Q9NZ42 Gamma-secretase subunit PEN-25.2e-0835.11Show/hide
Query:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFP------RIRPYIVGSAIGFAIFMAIISSWALTFSIGGERLFGPVWNKLVMY
        +S EE ++  R++Y  GFA LPFLW VN F+F+   R++   P      +I+ Y+  SA+GF  ++ +++SW   F I     + P W  L  Y
Subjt:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFP------RIRPYIVGSAIGFAIFMAIISSWALTFSIGGERLFGPVWNKLVMY

Arabidopsis top hitse value%identityAlignment
AT5G09310.1 CONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379); Has 168 Blast hits to 168 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).1.2e-4968.94Show/hide
Query:  QNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAIISSW
        +N N NPN NPN +   +SS  A +WPTID  LGL+EE SV YARRFYKFGFALLP+LW VNCFYFWPVLR S +FP+IR Y+V SAIGF++F A++S+W
Subjt:  QNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAIISSW

Query:  ALTFSIGGERLFGPVWNKLVMYNLADKLGLTG
        ALTFSIGGE+LFGP+++KLVMYN+AD+LGL+G
Subjt:  ALTFSIGGERLFGPVWNKLVMYNLADKLGLTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGCTCGCAGAATCCGAACACAAACCCAAATTCTAACCCCAATCGAATCCAGAATCCCGTATCATCACAGATTGCTGCGTTATGGCCGACCATTGATGCTTCACT
GGGGTTGTCGGAGGAAGAGTCAGTGAGCTATGCCCGTAGATTCTATAAATTTGGATTTGCATTGCTTCCATTTCTGTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTC
TCCGCGATTCTCACTCATTTCCTCGCATCCGACCCTATATTGTTGGCTCAGCTATTGGGTTTGCTATTTTCATGGCCATTATCTCCTCTTGGGCCTTGACATTTTCCATT
GGAGGAGAACGCCTCTTTGGACCCGTGTGGAACAAACTAGTGATGTACAACCTTGCTGACAAATTAGGATTGACAGGTTGGAGCTAA
mRNA sequenceShow/hide mRNA sequence
GAGTCATTGAAGTTTGCAATGGAGAGCTCGCAGAATCCGAACACAAACCCAAATTCTAACCCCAATCGAATCCAGAATCCCGTATCATCACAGATTGCTGCGTTATGGCC
GACCATTGATGCTTCACTGGGGTTGTCGGAGGAAGAGTCAGTGAGCTATGCCCGTAGATTCTATAAATTTGGATTTGCATTGCTTCCATTTCTGTGGGCGGTTAATTGCT
TCTACTTCTGGCCTGTTCTCCGCGATTCTCACTCATTTCCTCGCATCCGACCCTATATTGTTGGCTCAGCTATTGGGTTTGCTATTTTCATGGCCATTATCTCCTCTTGG
GCCTTGACATTTTCCATTGGAGGAGAACGCCTCTTTGGACCCGTGTGGAACAAACTAGTGATGTACAACCTTGCTGACAAATTAGGATTGACAGGTTGGAGCTAATTTTG
ATCTTGTTGTATATTTCAAAATGCGTAACTCTCTACTCTCATTCTTTTCTCCAAAGATCAAAGTTGAAGCTTTTGGGTTTACTTCTCCAAGTACTTCAAGGTTCAAACAT
AAACCTAGACACATGCTCATTTCAGAGTTCCCCCCCCGTAAGTAACAAAAGGAATCTCAGATCTAAGCACAATCAACATGAAATTTTTTGAGTTCAACAAACATAAATGG
TTTAAAGCACACTTGAAATCACATCGTCAAGTTTGAATTGGATCTTGTTCAGCTGCATTACTGAGATTTGTGGATTCAATACCAAACTGATTCTCTTATTTTTCCTCTGC
ATCCCTTTTCTCCTTTCAATACTATAAAACTGCGCCC
Protein sequenceShow/hide protein sequence
MESSQNPNTNPNSNPNRIQNPVSSQIAALWPTIDASLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRDSHSFPRIRPYIVGSAIGFAIFMAIISSWALTFSI
GGERLFGPVWNKLVMYNLADKLGLTGWS