CuGenDBv2

Gene ID	CmoCh02G006650
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L20
Genome location	Cmo_Chr02:4185192..4186573
RNA-Seq Expression	CmoCh02G006650
Synteny	CmoCh02G006650
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7035310.1 rplT, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.2e-62

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGL KENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKDGISVVL
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

XP_022149620.1 uncharacterized protein LOC111018005 [Momordica charantia]

4.6e-61

94.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVV PPKKDGIS+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

XP_022947351.1 uncharacterized protein LOC111451238 [Cucurbita moschata]

1.7e-63

100

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKDGISVVL
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

XP_022985864.1 uncharacterized protein LOC111483787 [Cucurbita maxima]

6.0e-61

94.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKD +S+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

XP_023007267.1 uncharacterized protein LOC111499805 [Cucurbita maxima]

6.4e-63

99.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKDGISVVL
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D684 50S ribosomal protein L20

2.2e-61

94.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVV PPKKDGIS+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

A0A6J1FUI3 50S ribosomal protein L20

3.8e-61

93.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKD +S+++
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

A0A6J1G662 50S ribosomal protein L20

8.1e-64

100

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKDGISVVL
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

A0A6J1JCG1 50S ribosomal protein L20

2.9e-61

94.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKD +S+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

A0A6J1KY75 50S ribosomal protein L20

3.1e-63

99.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKDGISVVL
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

SwissProt top hits

e value

%identity

Alignment

B6IPJ8 50S ribosomal protein L20

6.7e-31

62.38

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RL+G+ Y  FMHGL +  I+++RKVLS+++  EP SFK+LV+ ++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q2VYY8 50S ribosomal protein L20

3.1e-28

60.4

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        KI KLAKG+RGR+  C R+A ++VEKAL+Y+YRDRR KKR+ R+LWIQRINAG+R YG+ Y  FM GL K  I L+RKVLS++++ EP +FKSLV+ ++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q3YSX0 50S ribosomal protein L20

6.3e-29

60.4

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F+HGL   NI LNRKVL++++++   +FK +VDI++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q5FH69 50S ribosomal protein L20

3.7e-29

58.42

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R YG+ Y +F++GL   NI LNRK+L+++++H   +FK +VD+++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q5HC39 50S ribosomal protein L20

3.7e-29

58.42

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R YG+ Y +F++GL   NI LNRK+L+++++H   +FK +VD+++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

6.8e-55

83.06

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD
        MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R +GVNYGNF+HGLMKENIQLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVV
        +SR +FPGNKNVV   +K  IS +
Subjt:  ISRNAFPGNKNVVFPPKKDGISVV

ATCG00660.1 ribosomal protein L20

5.1e-10

38.2

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Query:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGV--NYGNFMHGLMKENIQLNRKVLSELSM
        + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     GV  +Y  F+H L K+ + LNRK+L+++++
Subjt:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGV--NYGNFMHGLMKENIQLNRKVLSELSM

Sequences

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CDS sequence

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ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGCTTCAGAGGCAGGGCTAAGAATTGCATAAGGATTGCTCGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAG
GGACCGTCGCAATAAGAAGAGAGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGCACACGCCTTTATGGGGTAAATTATGGAAATTTCATGCATGGGCTGATGA
AGGAGAACATTCAACTGAATAGAAAAGTATTATCAGAGCTTTCAATGCACGAACCTTACAGTTTCAAGTCCCTGGTAGACATCTCTCGAAATGCATTTCCTGGAAACAAG
AATGTAGTGTTTCCCCCAAAGAAGGATGGCATTTCCGTAGTTCTTTAA

mRNA sequence

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Protein sequence

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MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNK
NVVFPPKKDGISVVL

CmoCh02G006650 (gene) of Cucurbita moschata (Rifu) v1 genome