CuGenDBv2

Gene ID	CmoCh02G007470
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	30S ribosomal protein S18
Genome location	Cmo_Chr02:4689121..4689932
RNA-Seq Expression	CmoCh02G007470
Synteny	CmoCh02G007470
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005763 - mitochondrial small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR001648 - Ribosomal protein S18

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022943865.1 uncharacterized protein LOC111448465 [Cucurbita moschata]

2.4e-70

87.5

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MR VQVA RT+GGG++R+FKQPS LRNLSTNAARD  FDD+GK +SFESADDFERRIFGGVS GDSGNDAFFEKLDR+GKPRERIGSRLSGGNNFQ+LYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
        ++DNLNTLSDGMDGKLKKASTYFEFD EEIAKDDYTFRADMSFKPGSTYE+K
Subjt:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK

XP_022947026.1 uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata]

1.7e-79

100

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
        IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
Subjt:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK

XP_022947027.1 uncharacterized protein LOC111451027 isoform X2 [Cucurbita moschata]

1.7e-79

100

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
        IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
Subjt:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK

XP_022986919.1 uncharacterized protein LOC111484513 [Cucurbita maxima]

2.4e-70

88.82

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        M  VQVA RT+GGG++R+FKQPS LRNLSTNAARD  FDD+GK +SFESADDFERRIFGGVS GDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
        ++DNLNTLSDGMDGKLKKASTYFEFD EEIAKDDYTFRADMSFKPGSTYEIK
Subjt:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK

XP_023007407.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 [Cucurbita maxima]

3.0e-76

98.03

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MRNV   FRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
        IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
Subjt:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FYC1 uncharacterized protein LOC111448465

1.2e-70

87.5

Show/hide

Query:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MR VQVA RT+GGG++R+FKQPS LRNLSTNAARD  FDD+GK +SFESADDFERRIFGGVS GDSGNDAFFEKLDR+GKPRERIGSRLSGGNNFQ+LYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
        ++DNLNTLSDGMDGKLKKASTYFEFD EEIAKDDYTFRADMSFKPGSTYE+K
Subjt:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK

A0A6J1G586 uncharacterized protein LOC111451027 isoform X1

8.1e-80

100

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
        IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
Subjt:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK

A0A6J1G5B3 uncharacterized protein LOC111451027 isoform X2

8.1e-80

100

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
        IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
Subjt:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK

A0A6J1JHF0 uncharacterized protein LOC111484513

1.2e-70

88.82

Show/hide

Query:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        M  VQVA RT+GGG++R+FKQPS LRNLSTNAARD  FDD+GK +SFESADDFERRIFGGVS GDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
        ++DNLNTLSDGMDGKLKKASTYFEFD EEIAKDDYTFRADMSFKPGSTYEIK
Subjt:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK

A0A6J1KYL3 LOW QUALITY PROTEIN: uncharacterized protein LOC111499912

1.4e-76

98.03

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MRNV   FRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
        IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK
Subjt:  IEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G07210.1 Ribosomal protein S18

6.9e-07

29.05

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Query:  QPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERI-------GSRLSGGNNFQALYGIEDNLNTLSDGMD
        +P   R+L+TNA    + D     +SF+S+D+ +  +FG  +  D  ++ FF+ L +  K +          GSR SGG +       ++  +  SDG+D
Subjt:  QPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERI-------GSRLSGGNNFQALYGIEDNLNTLSDGMD

Query:  GKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIKTRSWATNCF
        GKLK+A+  +  D  +  K +Y+FR D +            SW  N F
Subjt:  GKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIKTRSWATNCF

Sequences

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CDS sequence

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ATGAGGAACGTTCAGGTTGCTTTTCGAACCATTGGAGGTGGCATAACGAGGAAATTTAAGCAACCTTCTGCGCTCAGAAACCTTTCCACAAACGCCGCTCGAGATTGTAG
TTTCGATGATGAGGGAAAATCCAATTCGTTTGAGTCTGCTGATGACTTTGAACGTCGGATATTTGGTGGCGTATCTTTGGGCGATTCCGGAAACGATGCTTTCTTTGAGA
AGCTTGATAGACTTGGTAAACCTCGTGAAAGGATCGGTTCAAGGCTGAGTGGTGGAAACAATTTTCAGGCGTTGTATGGTATTGAAGATAATCTTAACACGCTGTCGGAT
GGGATGGATGGCAAGTTGAAGAAAGCTTCTACGTATTTTGAGTTTGATCCTGAAGAAATAGCAAAAGATGATTATACTTTCAGAGCGGATATGTCCTTTAAACCTGGATC
AACATACGAAATCAAGACCCGTAGCTGGGCAACTAATTGTTTTTATACTTGTTAA

mRNA sequence

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GGGATCCCAATCCAACGTCAGCTTCGTTTCCAGCGTCCGAATCCTGTGAACTTCTTCTTCTCAGGCTCTGCCAGTGTTTCGCTCAGTGCGGAATGAGGAACGTTCAGGTT
GCTTTTCGAACCATTGGAGGTGGCATAACGAGGAAATTTAAGCAACCTTCTGCGCTCAGAAACCTTTCCACAAACGCCGCTCGAGATTGTAGTTTCGATGATGAGGGAAA
ATCCAATTCGTTTGAGTCTGCTGATGACTTTGAACGTCGGATATTTGGTGGCGTATCTTTGGGCGATTCCGGAAACGATGCTTTCTTTGAGAAGCTTGATAGACTTGGTA
AACCTCGTGAAAGGATCGGTTCAAGGCTGAGTGGTGGAAACAATTTTCAGGCGTTGTATGGTATTGAAGATAATCTTAACACGCTGTCGGATGGGATGGATGGCAAGTTG
AAGAAAGCTTCTACGTATTTTGAGTTTGATCCTGAAGAAATAGCAAAAGATGATTATACTTTCAGAGCGGATATGTCCTTTAAACCTGGATCAACATACGAAATCAAGAC
CCGTAGCTGGGCAACTAATTGTTTTTATACTTGTTAA

Protein sequence

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MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGIEDNLNTLSD
GMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYEIKTRSWATNCFYTC

CmoCh02G007470 (gene) of Cucurbita moschata (Rifu) v1 genome