CuGenDBv2

Gene ID	CmoCh02G007480
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein S18
Genome location	Cmo_Chr02:4690127..4691246
RNA-Seq Expression	CmoCh02G007480
Synteny	CmoCh02G007480
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001648 - Ribosomal protein S18 IPR036870 - Ribosomal protein S18 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022148322.1 uncharacterized protein LOC111017003 [Momordica charantia]

9.8e-54

90.4

Show/hide

Query:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
        ST+E I+DLDL KPGVRKPPKRVEFQVTTEEVL+KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTK+FVFGKTME
Subjt:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME

Query:  YLDKDYEYEVFENNTDADRGRPHGS
         LDKDYEYEVF+N  DADRG P GS
Subjt:  YLDKDYEYEVFENNTDADRGRPHGS

XP_022947026.1 uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata]

9.2e-60

97.6

Show/hide

Query:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
        ST+E I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
Subjt:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME

Query:  YLDKDYEYEVFENNTDADRGRPHGS
        YLDKDYEYEVFENNTDADRGRPHGS
Subjt:  YLDKDYEYEVFENNTDADRGRPHGS

XP_022986919.1 uncharacterized protein LOC111484513 [Cucurbita maxima]

3.9e-50

89.6

Show/hide

Query:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
        ST+E I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGII KRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
Subjt:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME

Query:  YLDKDYEYEVFENNTDADRGRPHGS
         LDKDYEYEVF+NN   D G P GS
Subjt:  YLDKDYEYEVFENNTDADRGRPHGS

XP_023007407.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 [Cucurbita maxima]

8.0e-56

93.6

Show/hide

Query:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
        ST+E I+DLDLTKPGVRK PKRVEF V TEEVLR ADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMP TTMGTKSFVFGKTME
Subjt:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME

Query:  YLDKDYEYEVFENNTDADRGRPHGS
        YLDKDYEYEVFENNTDADRGRPHGS
Subjt:  YLDKDYEYEVFENNTDADRGRPHGS

XP_023532312.1 uncharacterized protein LOC111794503 [Cucurbita pepo subsp. pepo]

9.2e-60

97.6

Show/hide

Query:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
        ST+E I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
Subjt:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME

Query:  YLDKDYEYEVFENNTDADRGRPHGS
        YLDKDYEYEVFENNTDADRGRPHGS
Subjt:  YLDKDYEYEVFENNTDADRGRPHGS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D4R9 uncharacterized protein LOC111017003

4.8e-54

90.4

Show/hide

Query:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
        ST+E I+DLDL KPGVRKPPKRVEFQVTTEEVL+KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTK+FVFGKTME
Subjt:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME

Query:  YLDKDYEYEVFENNTDADRGRPHGS
         LDKDYEYEVF+N  DADRG P GS
Subjt:  YLDKDYEYEVFENNTDADRGRPHGS

A0A6J1FYC1 uncharacterized protein LOC111448465

2.1e-49

Show/hide

Query:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
        ST+E ++DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGII KRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
Subjt:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME

Query:  YLDKDYEYEVFENNTDADRGRPHGS
         LDKDYEYEVF+NN   D   P GS
Subjt:  YLDKDYEYEVFENNTDADRGRPHGS

A0A6J1G586 uncharacterized protein LOC111451027 isoform X1

4.4e-60

97.6

Show/hide

Query:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
        ST+E I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
Subjt:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME

Query:  YLDKDYEYEVFENNTDADRGRPHGS
        YLDKDYEYEVFENNTDADRGRPHGS
Subjt:  YLDKDYEYEVFENNTDADRGRPHGS

A0A6J1JHF0 uncharacterized protein LOC111484513

1.9e-50

89.6

Show/hide

Query:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
        ST+E I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGII KRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
Subjt:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME

Query:  YLDKDYEYEVFENNTDADRGRPHGS
         LDKDYEYEVF+NN   D G P GS
Subjt:  YLDKDYEYEVFENNTDADRGRPHGS

A0A6J1KYL3 LOW QUALITY PROTEIN: uncharacterized protein LOC111499912

3.9e-56

93.6

Show/hide

Query:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME
        ST+E I+DLDLTKPGVRK PKRVEF V TEEVLR ADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMP TTMGTKSFVFGKTME
Subjt:  STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME

Query:  YLDKDYEYEVFENNTDADRGRPHGS
        YLDKDYEYEVFENNTDADRGRPHGS
Subjt:  YLDKDYEYEVFENNTDADRGRPHGS

SwissProt top hits

e value

%identity

Alignment

O66476 30S ribosomal protein S18

1.6e-06

42.86

Show/hide

Query:  VRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPF
        VR P K+V       E  R+ D++N   L NF+T+ G I  R +TG+ AK QR++A +IK AR  GL+P+
Subjt:  VRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPF

P62659 30S ribosomal protein S18

1.4e-07

41.89

Show/hide

Query:  KPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFT
        K   R+P ++ + + T  E     D+RNV  L  F+++ G I  R +TG+SAK QR +A+ IK AR  GL+PFT
Subjt:  KPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFT

P80382 30S ribosomal protein S18

4.2e-07

40.54

Show/hide

Query:  KPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFT
        K   R+P ++ + + T  E     D+RNV  L  F+++ G I  R +TG+S K QR +A+ IK AR  GL+PFT
Subjt:  KPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFT

Q5SLQ0 30S ribosomal protein S18

1.4e-07

41.89

Show/hide

Query:  KPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFT
        K   R+P ++ + + T  E     D+RNV  L  F+++ G I  R +TG+SAK QR +A+ IK AR  GL+PFT
Subjt:  KPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFT

Q8RIE4 30S ribosomal protein S18

1.2e-06

40.91

Show/hide

Query:  KRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFT
        +R + +V  EE+    D++NV  L  F++D G IN    TG +AK QRK+A+ +K AR   L+P+T
Subjt:  KRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFT

Arabidopsis top hits

e value

%identity

Alignment

AT1G07210.1 Ribosomal protein S18

9.9e-36

76.84

Show/hide

Query:  QVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG
        +VTTEEVL+ ADFRNVRFLANFIT+AGII KR +TGISAKAQRK+AREIKTARAFGLMPFTTMGTK+F FGKTME  D+D+EYEV +++ + D G
Subjt:  QVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTTAATGTTACCATTATTCTAAGTACTTTTGAATTTATACAGGATCTGGATCTAACAAAGCCTGGTGTACGCAAACCTCCCAAAAGAGTTGAGTTTCAGGTGACGAC
GGAGGAGGTCTTAAGAAAAGCTGATTTCAGGAATGTTAGGTTTCTGGCGAATTTTATTACCGATGCCGGGATCATTAACAAGAGGAGCAAGACAGGTATCAGTGCCAAAG
CACAGAGGAAAGTTGCCCGTGAGATCAAAACAGCACGAGCTTTTGGCTTAATGCCTTTCACAACAATGGGAACCAAATCATTTGTTTTTGGGAAGACCATGGAGTATCTC
GATAAGGACTATGAATATGAAGTTTTCGAGAATAATACCGATGCAGATAGAGGACGCCCACATGGTTCCTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLNVTIILSTFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYL
DKDYEYEVFENNTDADRGRPHGS

CmoCh02G007480 (gene) of Cucurbita moschata (Rifu) v1 genome