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CmoCh02G007510 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G007510
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionElf4 domain-containing protein
Genome locationCmo_Chr02:4695000..4696163
RNA-Seq ExpressionCmoCh02G007510
SyntenyCmoCh02G007510
Gene Ontology termsGO:0009649 - entrainment of circadian clock (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035362.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-2994.74Show/hide
Query:  MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN
        MKNKGAKSDEGDK DDGDLE EECDMEVWNMLRKSF QVQSVLEHNRLLIQQVNENQQSRIS+NLVNNISLIHEIN
Subjt:  MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN

XP_022948227.1 protein EARLY FLOWERING 4-like [Cucurbita moschata]1.3e-38100Show/hide
Query:  MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVKS
        MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVKS
Subjt:  MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVKS

XP_023006797.1 protein ELF4-LIKE 1-like [Cucurbita maxima]1.4e-2784.52Show/hide
Query:  MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVK
        MKNK  KSDE D  DDGDLE EECDMEV NMLRKSF QVQSVLEHNRL+IQQVNENQQSRIS+NLVNNISLIHEINEA  YGV+
Subjt:  MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVK

XP_023532325.1 protein EARLY FLOWERING 4-like [Cucurbita pepo subsp. pepo]3.1e-2790.79Show/hide
Query:  MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN
        MKNK  KSDE DK DDGDLE EECDMEVWNMLRKSF QVQSVLEHNRLLIQQVNENQQSRIS+NLVNNISLIHEIN
Subjt:  MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN

XP_034688802.1 protein EARLY FLOWERING 4-like [Vitis riparia]3.3e-1368.12Show/hide
Query:  DKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALC
        DK DD D   E CD EVW +L +SF QVQSVL+ NRLLIQQVNENQQSRI +NLV N+SLI EIN  +C
Subjt:  DKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALC

TrEMBL top hitse value%identityAlignment
A0A1Q3BF09 DUF1313 domain-containing protein (Fragment)4.6e-1358.97Show/hide
Query:  KNKGAKSDEGDKCDDGDL---EVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN
        K    KS+ GD   D D+   E EECD+EVW+ L K+F QVQ+VL+HNR+LIQQVNEN QSR  +NLV N+ LI EIN
Subjt:  KNKGAKSDEGDKCDDGDL---EVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN

A0A438G1X7 Protein early flowering 43.6e-1368.12Show/hide
Query:  DKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALC
        DK DD D E E CD EVW  L +SF QVQSVL+ NRLLIQQVNENQQSRI +NLV N+SL  EIN  +C
Subjt:  DKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALC

A0A6J1G8L9 protein EARLY FLOWERING 4-like6.4e-39100Show/hide
Query:  MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVKS
        MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVKS
Subjt:  MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVKS

A0A6J1KWT2 protein ELF4-LIKE 1-like6.7e-2884.52Show/hide
Query:  MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVK
        MKNK  KSDE D  DDGDLE EECDMEV NMLRKSF QVQSVLEHNRL+IQQVNENQQSRIS+NLVNNISLIHEINEA  YGV+
Subjt:  MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVK

A5C8U3 Elf4 domain-containing protein3.6e-1368.12Show/hide
Query:  DKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALC
        DK DD D E E CD EVW  L +SF QVQSVL+ NRLLIQQVNENQQSRI +NLV N+SL  EIN  +C
Subjt:  DKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALC

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 45.7e-0853.85Show/hide
Query:  DMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN
        D  +W  L ++F QVQSVL+ NR LIQQVN+N QSR+++N+  N++LI E+N
Subjt:  DMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN

O80877 Protein ELF4-LIKE 12.4e-0636.36Show/hide
Query:  NKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVKSEIRDMCTNSTVNSTRK
        N+  + +E D  D       E D+EVW+ L   F + Q  L+ NR LIQ+VNEN  SRI +N+  N+ LI+EIN     G  S++ ++ ++ ++N  +K
Subjt:  NKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVKSEIRDMCTNSTVNSTRK

Q570U6 Protein ELF4-LIKE 42.9e-0442.31Show/hide
Query:  DMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN
        D ++    +KSF  VQ +L+ NRLLI ++N+N +S+  +NL  N+ LI E+N
Subjt:  DMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN

Q8S8F5 Protein ELF4-LIKE 36.3e-0746.3Show/hide
Query:  ECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN
        + D ++     KSF QVQ++L+HNRLLI ++N+N +S+I +NL  N+ LI E+N
Subjt:  ECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN

Q94BS8 Protein ELF4-LIKE 21.7e-0440.74Show/hide
Query:  ECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN
        + D ++    +KSF QVQ +L+ NRLLI ++N+N +S+ +++L  N+ LI E+N
Subjt:  ECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 42.1e-0542.31Show/hide
Query:  DMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN
        D ++    +KSF  VQ +L+ NRLLI ++N+N +S+  +NL  N+ LI E+N
Subjt:  DMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN

AT1G72630.1 ELF4-like 21.2e-0540.74Show/hide
Query:  ECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN
        + D ++    +KSF QVQ +L+ NRLLI ++N+N +S+ +++L  N+ LI E+N
Subjt:  ECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN

AT2G06255.1 ELF4-like 34.4e-0846.3Show/hide
Query:  ECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN
        + D ++     KSF QVQ++L+HNRLLI ++N+N +S+I +NL  N+ LI E+N
Subjt:  ECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN

AT2G29950.1 ELF4-like 11.7e-0736.36Show/hide
Query:  NKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVKSEIRDMCTNSTVNSTRK
        N+  + +E D  D       E D+EVW+ L   F + Q  L+ NR LIQ+VNEN  SRI +N+  N+ LI+EIN     G  S++ ++ ++ ++N  +K
Subjt:  NKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVKSEIRDMCTNSTVNSTRK

AT2G40080.1 Protein of unknown function (DUF1313)4.0e-0953.85Show/hide
Query:  DMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN
        D  +W  L ++F QVQSVL+ NR LIQQVN+N QSR+++N+  N++LI E+N
Subjt:  DMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEIN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAACAAAGGGGCGAAGTCAGATGAGGGAGACAAATGCGACGACGGTGATTTAGAGGTGGAGGAATGCGATATGGAGGTCTGGAATATGCTTAGGAAGAGCTTCCC
TCAGGTGCAGTCCGTATTGGAACATAATCGTTTGTTAATCCAGCAGGTGAACGAGAATCAGCAGTCTAGGATCTCCAATAATCTGGTCAACAACATCTCGTTGATCCATG
AAATTAACGAGGCGTTGTGTTACGGAGTGAAGTCCGAGATCCGTGACATGTGCACCAATTCTACCGTAAACAGTACAAGAAAGAAAAGCACAGTGAGTGAGGGTTGGATA
TTGGGGGATATGCTATGCTGA
mRNA sequenceShow/hide mRNA sequence
CGGTGGCGCTGGGAGAATTTGAGAGAGCTCCCCCGGGAATGGGGTCGGAGGAATGAATTGTGTTCTTCGTCTTCTTCTTCTTCTCTTCGATCCATAGACGGATACGGAAG
ATCTTGCAAGAGCTTCAATTCCATGAAGAACAAAGGGGCGAAGTCAGATGAGGGAGACAAATGCGACGACGGTGATTTAGAGGTGGAGGAATGCGATATGGAGGTCTGGA
ATATGCTTAGGAAGAGCTTCCCTCAGGTGCAGTCCGTATTGGAACATAATCGTTTGTTAATCCAGCAGGTGAACGAGAATCAGCAGTCTAGGATCTCCAATAATCTGGTC
AACAACATCTCGTTGATCCATGAAATTAACGAGGCGTTGTGTTACGGAGTGAAGTCCGAGATCCGTGACATGTGCACCAATTCTACCGTAAACAGTACAAGAAAGAAAAG
CACAGTGAGTGAGGGTTGGATATTGGGGGATATGCTATGCTGA
Protein sequenceShow/hide protein sequence
MKNKGAKSDEGDKCDDGDLEVEECDMEVWNMLRKSFPQVQSVLEHNRLLIQQVNENQQSRISNNLVNNISLIHEINEALCYGVKSEIRDMCTNSTVNSTRKKSTVSEGWI
LGDMLC