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CmoCh02G007720 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G007720
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionMitochondrial 28S Ribosomal protein
Genome locationCmo_Chr02:4807288..4809662
RNA-Seq ExpressionCmoCh02G007720
SyntenyCmoCh02G007720
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR032053 - Mitochondrial 28S ribosomal protein S34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605433.1 hypothetical protein SDJN03_02750, partial [Cucurbita argyrosperma subsp. sororia]2.7e-7998.72Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLS SSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSL RSLENEPTTMTNLGESNPSAEVQSS
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS

XP_022947647.1 uncharacterized protein LOC111451448 [Cucurbita moschata]8.5e-81100Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS

XP_023007567.1 uncharacterized protein LOC111500023 [Cucurbita maxima]3.9e-7897.44Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSL RS ENEPTTMTNLGESNPSAEVQ+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS

XP_023532313.1 uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo]2.7e-7998.08Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRS ENEPTTMTNLGESNPSAE Q+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS

XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]3.0e-6281.82Show/hide
Query:  VANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIA
        VANRT ISRALDFSRL+S+FIR FSTS+ STSSS+P+AS A++KNKRRKKKKNLFEV+QFLPNWGVGYHVAK HWDEISYQITKINLYKNGTHGKAWGIA
Subjt:  VANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIA

Query:  HKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS
        HK+G PIAEAPKKISGVHKRCWKYI SLPRS           GESNPSAEVQ+S
Subjt:  HKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS

TrEMBL top hitse value%identityAlignment
A0A0A0KH76 Uncharacterized protein2.6e-5977.56Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRT ISRALDFSRL+SSF+R FS+S+ STSSS+P+AS  +S+ KRRKKKKNLFEV+QFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNG PI EAPKKISGVHKRCWKYI SLP S           GES  SAEVQ+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS

A0A1S3CKN2 uncharacterized protein LOC1035020498.9e-6078.85Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRT ISRALDFSRL+SSFIR F++S+ STSSS+P+AS ++S+ KRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNG PI EAPKKISGVHKRCWKYI SLPR           LGES  SAEVQ+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS

A0A5A7V0Y6 Uncharacterized protein8.9e-6078.85Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRT ISRALDFSRL+SSFIR F++S+ STSSS+P+AS ++S+ KRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNG PI EAPKKISGVHKRCWKYI SLPR           LGES  SAEVQ+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS

A0A6J1G714 uncharacterized protein LOC1114514484.1e-81100Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS

A0A6J1KZ28 uncharacterized protein LOC1115000231.9e-7897.44Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSL RS ENEPTTMTNLGESNPSAEVQ+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52370.1 unknown protein1.9e-3860.9Show/hide
Query:  TTISRALDFS------RLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG
        T I+RA+  +      RL+ + +RNFS +  S + S  S     SK KRR KKKNL EV QFLPNWG+GYH+AK HW+ ISY+ITKINLYK+G HGKAWG
Subjt:  TTISRALDFS------RLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRS
        I HK+G   AEAPKKISGVHKRCWKYIP+L ++
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLPRS

AT5G58990.1 unknown protein8.6e-3960Show/hide
Query:  LASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKIS
        L+ S +RNFS +  + S+      ++ S   +R+KKKNL EV QFLPNWG+GYH+AK HW+ ISY+ITKINLYK+G HGKAWGI HK+G   AEAPKKIS
Subjt:  LASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKIS

Query:  GVHKRCWKYIPSLPRSLENEPTTMT
        GVHKRCWKYIP+L ++    P T T
Subjt:  GVHKRCWKYIPSLPRSLENEPTTMT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTCGCCAACAGAACTACGATCAGTCGAGCCCTAGATTTCTCCAGGCTAGCTTCGAGCTTTATCAGAAACTTCAGCACTTCTACGCTGTCAACCTCTTCTTCGGA
TCCCAGTGCCTCGGCTGCTGCGAGTAAAAACAAGCGGAGGAAGAAGAAGAAGAACCTGTTCGAAGTAATTCAGTTTTTACCCAATTGGGGAGTAGGATACCATGTCGCCA
AGGGTCACTGGGATGAAATATCGTACCAGATCACCAAGATTAATCTGTATAAGAATGGCACGCATGGCAAGGCTTGGGGCATCGCTCATAAAAATGGTGCGCCCATTGCT
GAAGCTCCAAAGAAGATCAGTGGAGTTCACAAGCGCTGTTGGAAGTATATCCCAAGCTTGCCAAGATCATTAGAGAACGAACCAACCACAATGACGAATTTGGGAGAAAG
CAACCCATCAGCTGAGGTTCAAAGTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATTTTCACTTAGTACCGGAGAGGAGCAACCAAACCTAGAGAGAGAGACGCCAATGGCTGTCGCCAACAGAACTACGATCAGTCGAGCCCTAGATTTCTCCAGGCTAGCTT
CGAGCTTTATCAGAAACTTCAGCACTTCTACGCTGTCAACCTCTTCTTCGGATCCCAGTGCCTCGGCTGCTGCGAGTAAAAACAAGCGGAGGAAGAAGAAGAAGAACCTG
TTCGAAGTAATTCAGTTTTTACCCAATTGGGGAGTAGGATACCATGTCGCCAAGGGTCACTGGGATGAAATATCGTACCAGATCACCAAGATTAATCTGTATAAGAATGG
CACGCATGGCAAGGCTTGGGGCATCGCTCATAAAAATGGTGCGCCCATTGCTGAAGCTCCAAAGAAGATCAGTGGAGTTCACAAGCGCTGTTGGAAGTATATCCCAAGCT
TGCCAAGATCATTAGAGAACGAACCAACCACAATGACGAATTTGGGAGAAAGCAACCCATCAGCTGAGGTTCAAAGTTCATGAGACTGCAGAGAAATTTAAGCTGCTGAT
TCTTTTTGGCCTACCTTATTTCCAGGTTCACAGAGTTCTAATTCTCTCTATATTAGCAGTCCTTAAATGTAGTCAGGTTTCCTAACGCCATCATATGAGGAGCATTTTGA
GCTTTGCTTGTTTCGGAGATAAAGAAAGATCAATCATCCCGAACTATGTGTAAGTTAGAACTTGTTTCCTATTCTCAGTTACTACTGGATTTTTATGTTAAATAGGTTGA
AGAATCTAGTTGGTATTTGTTAATCTGTGATCTTCGTCCTGCCGTGAGACGAACATAAAAAAAAAAACTCATGAACATGTTCTTTTGTTTAAAATTACTTGCTGAATTAG
AAATTTATTAGAATATTAGATGAAAAGTTGATGTGACAGTAACTTAAGTCGGTGCGTCACTGATTAGGACTTTGGCCAAAATTAAGTCTAAAAAGAATAATGTTCCATCA
TGTTGGCTTCCGG
Protein sequenceShow/hide protein sequence
MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIA
EAPKKISGVHKRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS