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CmoCh02G007800 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G007800
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionMajor viral transcription factor
Genome locationCmo_Chr02:4852225..4852641
RNA-Seq ExpressionCmoCh02G007800
SyntenyCmoCh02G007800
Gene Ontology termsNA
InterPro domainsIPR040381 - Uncharacterized protein At4g14450-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570684.1 hypothetical protein SDJN03_29599, partial [Cucurbita argyrosperma subsp. sororia]3.8e-4874.1Show/hide
Query:  MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVD-GGYGDQRG
        MNANQ+ VVDF RAAM+ +   R+PKPPTRLQKQAPA L+LDQL+SVSM S   +  SK VLPLLSPLPSSPQPFPETEGNR  ANGN V+ GG GDQRG
Subjt:  MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVD-GGYGDQRG

Query:  MCFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP
        + FA PGGWQHPAVA T+ADPSTLFTFFQS+CI+ S TP
Subjt:  MCFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP

KAG6605440.1 hypothetical protein SDJN03_02757, partial [Cucurbita argyrosperma subsp. sororia]1.0e-6997.83Show/hide
Query:  MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVDGGYGDQRGM
        MNANQAFVVDFP AAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKA+LPLLSPLPSSPQPFPETEGNRRAANGNTVDGGYGDQRG+
Subjt:  MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVDGGYGDQRGM

Query:  CFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP
        CFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP
Subjt:  CFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP

XP_011657141.1 uncharacterized protein LOC105435808 [Cucumis sativus]4.0e-5076.43Show/hide
Query:  MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVD--GGYGDQR
        M+ANQ  VVDF R +ME E+K RLPKPPTRLQKQAPASLHLDQL+SVSMSS S DI SKA+LPLLSPLP SPQP PE +GNR +ANGN VD  GG GDQR
Subjt:  MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVD--GGYGDQR

Query:  GMCFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP
        G+ F  PGGWQHPAVA TF DPSTLFTFFQSQC+V+S TP
Subjt:  GMCFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP

XP_023512816.1 uncharacterized protein LOC111777440 [Cucurbita pepo subsp. pepo]4.4e-4975.54Show/hide
Query:  MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVD-GGYGDQRG
        MNANQ+ VVDF RAAM+ E   R+PKPPTRLQKQAPA L+LDQL+SVSMSS   +ISSK VLPLLSPLPSSPQPF ETEGNR   NGN  D GG GDQRG
Subjt:  MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVD-GGYGDQRG

Query:  MCFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP
        + FA PGGWQHPAVA T+ADPSTLFTFFQS+CI+ S TP
Subjt:  MCFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP

XP_038902307.1 uncharacterized protein LOC120088941 [Benincasa hispida]2.5e-5278.57Show/hide
Query:  MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVD--GGYGDQR
        MNANQ  V+DF R +ME EHK+RLPKPPTRLQKQAPASLHLDQL+SVSMSSGSAD  SKA+LPLLSPLP SPQP PE +GNR +ANGN  D  GG GDQR
Subjt:  MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVD--GGYGDQR

Query:  GMCFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP
        G+ FA PGGWQHPAVA TF DPSTLFTFFQSQCIV S TP
Subjt:  GMCFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP

TrEMBL top hitse value%identityAlignment
A0A0A0KBQ7 Uncharacterized protein1.9e-5076.43Show/hide
Query:  MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVD--GGYGDQR
        M+ANQ  VVDF R +ME E+K RLPKPPTRLQKQAPASLHLDQL+SVSMSS S DI SKA+LPLLSPLP SPQP PE +GNR +ANGN VD  GG GDQR
Subjt:  MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVD--GGYGDQR

Query:  GMCFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP
        G+ F  PGGWQHPAVA TF DPSTLFTFFQSQC+V+S TP
Subjt:  GMCFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP

A0A2I4HTA9 uncharacterized protein LOC1089904953.1e-1647.01Show/hide
Query:  EKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVDGGYGDQRGMCFAPPGGWQHPAVATT
        +KE K+++ KPPTRLQKQAPASL LD++     +S          +P LSPL  SPQP PET   R   +G+  +   G +R     P GGWQHPAV   
Subjt:  EKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVDGGYGDQRGMCFAPPGGWQHPAVATT

Query:  FADPSTLFTFFQSQCIV
        F +P  LFT FQSQC++
Subjt:  FADPSTLFTFFQSQCIV

A0A5A7V856 Uncharacterized protein3.0e-4376.8Show/hide
Query:  MEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVD--GGYGDQRGMCFAPPGGWQHPAV
        ME E K RLPKPPTRLQKQAPASLHLDQL+SVSMSS S D  SKA+LPLLSPLP SPQP PE +GNR +A GN V+  GG GDQRG+ F  PGGWQHPAV
Subjt:  MEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVD--GGYGDQRGMCFAPPGGWQHPAV

Query:  ATTFADPSTLFTFFQSQCIVNSKTP
        A TF DPSTLFTFFQSQCIV+S TP
Subjt:  ATTFADPSTLFTFFQSQCIVNSKTP

A0A6J1D5B7 uncharacterized protein LOC1110170712.1e-2872.38Show/hide
Query:  MNANQAFVVDFPRAAMEKEH--KSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNR----RAANGNTVDGGY
        MNANQ+ V+DF RA+MEKEH  KSR+PKPPTRLQKQAPASLHLDQ++S SM+ G A+ SSKA+LPLLSPLP SPQP+PETE N      AAN N VDGG 
Subjt:  MNANQAFVVDFPRAAMEKEH--KSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNR----RAANGNTVDGGY

Query:  GDQRG
        GDQRG
Subjt:  GDQRG

A0A6P3ZH11 uncharacterized protein LOC1074110182.2e-1755.36Show/hide
Query:  KPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRR---AANGNTVDGGYGDQRGMCF-APPGGWQHPAVATTFADPS
        KPPTRLQK+APASL LDQ+ + S ++ S + +SKA+ PLLSPL  SPQP PE    RR   AA+ + V+    D+R      P  GWQHPAV TTF DPS
Subjt:  KPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRR---AANGNTVDGGYGDQRGMCF-APPGGWQHPAVATTFADPS

Query:  TLFTFFQSQCIV
        +LF FFQSQC++
Subjt:  TLFTFFQSQCIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G07473.1 unknown protein1.9e-0548.15Show/hide
Query:  KSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQP
        KS  P+ PTRLQKQAP +LHL  +        S+D+     +PLLSPL  SP P
Subjt:  KSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCAAATCAAGCTTTCGTGGTTGATTTCCCCAGAGCAGCAATGGAGAAAGAACATAAATCCAGATTGCCTAAACCTCCGACCAGGTTACAGAAGCAGGCGCCGGC
GAGTCTTCATCTCGATCAACTAACGAGTGTCTCAATGTCTTCTGGTAGTGCTGATATTTCTTCGAAGGCGGTTCTTCCTCTGCTATCGCCGCTCCCTTCATCGCCACAGC
CTTTTCCTGAAACTGAGGGAAATAGAAGAGCAGCAAACGGAAATACCGTAGACGGCGGCTATGGCGATCAAAGAGGTATGTGTTTTGCACCTCCTGGTGGCTGGCAACAT
CCAGCGGTGGCGACGACATTCGCCGATCCATCTACTCTGTTTACGTTCTTTCAATCGCAGTGCATCGTAAACAGTAAGACGCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGCAAATCAAGCTTTCGTGGTTGATTTCCCCAGAGCAGCAATGGAGAAAGAACATAAATCCAGATTGCCTAAACCTCCGACCAGGTTACAGAAGCAGGCGCCGGC
GAGTCTTCATCTCGATCAACTAACGAGTGTCTCAATGTCTTCTGGTAGTGCTGATATTTCTTCGAAGGCGGTTCTTCCTCTGCTATCGCCGCTCCCTTCATCGCCACAGC
CTTTTCCTGAAACTGAGGGAAATAGAAGAGCAGCAAACGGAAATACCGTAGACGGCGGCTATGGCGATCAAAGAGGTATGTGTTTTGCACCTCCTGGTGGCTGGCAACAT
CCAGCGGTGGCGACGACATTCGCCGATCCATCTACTCTGTTTACGTTCTTTCAATCGCAGTGCATCGTAAACAGTAAGACGCCGTGA
Protein sequenceShow/hide protein sequence
MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVDGGYGDQRGMCFAPPGGWQH
PAVATTFADPSTLFTFFQSQCIVNSKTP