CuGenDBv2

Gene ID	CmoCh02G007920
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Scarecrow-like transcription factor 11
Genome location	Cmo_Chr02:4895184..4898184
RNA-Seq Expression	CmoCh02G007920
Synteny	CmoCh02G007920
Gene Ontology terms	GO:0000460 - maturation of 5.8S rRNA (biological process)
InterPro domains	IPR019324 - M-phase phosphoprotein 6

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605449.1 hypothetical protein SDJN03_02766, partial [Cucurbita argyrosperma subsp. sororia]

3.6e-83

76.5

Show/hide

Query:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEG
        MAKREISNTLRNLK                   R  C +              ++++++  ++ AAQKEEQPKKEEEVK EENLFPSSNIIR  VVLVEG
Subjt:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEG

Query:  DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ
        DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETP+PSSGNHSE  SSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGR PTKFPKSGRDNQ
Subjt:  DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ

Query:  QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
        QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
Subjt:  QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG

KAG7035397.1 hypothetical protein SDJN02_02193, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-85

78.11

Show/hide

Query:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRNVVLVEGD
        MAKREISNTLRNLK                                              FMQRAAQKEEQPKKEEEVK EENLFPSSNIIRNVVLVEGD
Subjt:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRNVVLVEGD

Query:  PHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQQ
        PHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETP+PSSGNHSE  SSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGR PTKFPKSGRDNQQ
Subjt:  PHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQQ

Query:  SSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
        SSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
Subjt:  SSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG

XP_022947916.1 uncharacterized protein LOC111451657 [Cucurbita moschata]

1.6e-88

79.49

Show/hide

Query:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEG
        MAKREISNTLRNLK                                              FMQRAAQKEEQPKKEEEVKPEENLFPSSNIIR  VVLVEG
Subjt:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEG

Query:  DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ
        DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ
Subjt:  DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ

Query:  QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
        QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
Subjt:  QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG

XP_023007374.1 uncharacterized protein LOC111499887 [Cucurbita maxima]

2.0e-86

78.63

Show/hide

Query:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEG
        MAKREISNTLRNLK                                              FMQRAAQKEEQPKKEEEVKPEENLFPSSNIIR  VVLVEG
Subjt:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEG

Query:  DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ
        DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRET D SSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ
Subjt:  DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ

Query:  QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
        QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
Subjt:  QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG

XP_023532308.1 uncharacterized protein LOC111794500 isoform X1 [Cucurbita pepo subsp. pepo]

1.4e-87

79.06

Show/hide

Query:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEG
        MAKREISNTLRNLK                                              FMQRAAQKEEQPKKEEEVKPEENLFPSSNIIR  VVLVEG
Subjt:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEG

Query:  DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ
        DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPD SSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ
Subjt:  DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ

Query:  QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
        QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
Subjt:  QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FT40 uncharacterized protein LOC111448524 isoform X1

6.6e-67

72.82

Show/hide

Query:  LVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEGDPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSEN
        + K +L   L  + FMQRA Q+E+QPK+EEEVKP+EN FPSS IIR  VVLVEGDPHPGA +GR+SFQSFNPSID+LNEE+ASLGQ E P  SSGNHS N
Subjt:  LVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEGDPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSEN

Query:  VSS-------RENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQQSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
        +SS       R+NGSS+NEA  SN DEKNCE N DLKRKQSEVVS+GRHPTKFP+SGRDNQQSSF++GKG  KKPKGE LDWNVLRPSKTPNK G
Subjt:  VSS-------RENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQQSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG

A0A6J1FUG1 uncharacterized protein LOC111448524 isoform X2

5.4e-69

75.53

Show/hide

Query:  LVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEGDPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSEN
        + K +L   L  + FMQRA Q+E+QPK+EEEVKP+EN FPSS IIR  VVLVEGDPHPGA +GR+SFQSFNPSID+LNEE+ASLGQ E P  SSGNHS N
Subjt:  LVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEGDPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSEN

Query:  VSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQQSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
        +SSR+NGSS+NEA  SN DEKNCE N DLKRKQSEVVS+GRHPTKFP+SGRDNQQSSF++GKG  KKPKGE LDWNVLRPSKTPNK G
Subjt:  VSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQQSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG

A0A6J1G7T2 uncharacterized protein LOC111451657

8.0e-89

79.49

Show/hide

Query:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEG
        MAKREISNTLRNLK                                              FMQRAAQKEEQPKKEEEVKPEENLFPSSNIIR  VVLVEG
Subjt:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEG

Query:  DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ
        DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ
Subjt:  DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ

Query:  QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
        QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
Subjt:  QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG

A0A6J1JFF6 uncharacterized protein LOC111484532 isoform X2

5.2e-64

72.34

Show/hide

Query:  LVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEGDPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSEN
        + K +L   L  + FMQRA Q+EE PKKEEEVK +EN FPSS IIR  VVLVEGD HPG  +GR+SFQSFNPSID+LNE+VASL Q E P  S GNH  N
Subjt:  LVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEGDPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSEN

Query:  VSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQQSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
        +SSR+NGSS+NEA  SN+DEKNCE N DLKRKQS VVS+GRHPTKFP+SGRDNQQSSF++GKG  KKPKGE LDWNVLRPSKTPNK G
Subjt:  VSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQQSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG

A0A6J1L4S0 uncharacterized protein LOC111499887

9.8e-87

78.63

Show/hide

Query:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEG
        MAKREISNTLRNLK                                              FMQRAAQKEEQPKKEEEVKPEENLFPSSNIIR  VVLVEG
Subjt:  MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRN-VVLVEG

Query:  DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ
        DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRET D SSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ
Subjt:  DPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQ

Query:  QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
        QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG
Subjt:  QSSFNNGKGFFKKPKGENLDWNVLRPSKTPNKRG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G59460.1 scarecrow-like transcription factor 11 (SCL11)

4.4e-23

43.62

Show/hide

Query:  LVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNII--RNVVLVEGDPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSE
        + K ++   L  + FMQR++ K E+ K +EE       FPS   +  + VV+ + DP PGAL GR+SFQSFNPSI+KL+EE  + G     +PSS     
Subjt:  LVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNII--RNVVLVEGDPHPGALQGRLSFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSE

Query:  NVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRH-PTKFPKSGRDNQQSSFNNGKGFFKKPKGENLDWNVLRPSKTPNK
          SS   G        S+  E + ET+GDLKRKQSEVVSE ++ P K P+S  D    S   G G FKKPK + +DW+VLRP K   K
Subjt:  NVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRH-PTKFPKSGRDNQQSSFNNGKGFFKKPKGENLDWNVLRPSKTPNK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCAAGCGCGAGATTTCCAATACGTTAAGAAACTTGAAGGGCTTGAATTTTCTGTGTTTTCGATCAATTCTCTCAGGGACTGCCGAATTATGTTCTAGATTTCTTTG
TTTTGATTCTGGTTCTTGCAGCGCTGTACTTGTGAAGAACCAATTATTATTGTTATTGTTATTGATATCCTTCATGCAAAGGGCGGCTCAGAAAGAGGAGCAACCTAAAA
AAGAGGAAGAAGTAAAACCAGAGGAGAATTTATTTCCCTCGAGTAATATTATCAGAAATGTGGTTTTAGTTGAAGGAGATCCTCATCCCGGGGCTCTGCAAGGTCGATTG
TCATTTCAAAGCTTTAATCCTTCAATTGATAAACTCAATGAAGAAGTAGCTAGCTTAGGTCAGCGAGAAACTCCTGACCCTTCATCTGGGAATCACAGTGAAAACGTTTC
ATCAAGAGAAAATGGATCTTCACGAAATGAAGCAGTGTTCTCAAACAATGATGAAAAAAATTGTGAGACTAATGGGGACCTTAAAAGGAAACAATCTGAAGTAGTGTCTG
AAGGACGACATCCAACTAAGTTTCCAAAAAGTGGTCGGGACAATCAGCAGTCATCATTTAATAATGGTAAAGGATTCTTCAAGAAACCAAAGGGTGAAAATCTGGACTGG
AATGTCCTTAGGCCCTCTAAGACTCCAAATAAGAGGGGATAA

mRNA sequence

Show/hide mRNA sequence

CGCAGATTGTAGAGAGCTTCAAGGTTGCGCGCGCTACGTAAACGCGAGAGCGAAAGAGACACAGAAAAGAGATTAGAGAGTGACGTTCGTGGTTTGAGCTTTCCTTTGCC
CTAGCTATTATGGCCAAGCGCGAGATTTCCAATACGTTAAGAAACTTGAAGGGCTTGAATTTTCTGTGTTTTCGATCAATTCTCTCAGGGACTGCCGAATTATGTTCTAG
ATTTCTTTGTTTTGATTCTGGTTCTTGCAGCGCTGTACTTGTGAAGAACCAATTATTATTGTTATTGTTATTGATATCCTTCATGCAAAGGGCGGCTCAGAAAGAGGAGC
AACCTAAAAAAGAGGAAGAAGTAAAACCAGAGGAGAATTTATTTCCCTCGAGTAATATTATCAGAAATGTGGTTTTAGTTGAAGGAGATCCTCATCCCGGGGCTCTGCAA
GGTCGATTGTCATTTCAAAGCTTTAATCCTTCAATTGATAAACTCAATGAAGAAGTAGCTAGCTTAGGTCAGCGAGAAACTCCTGACCCTTCATCTGGGAATCACAGTGA
AAACGTTTCATCAAGAGAAAATGGATCTTCACGAAATGAAGCAGTGTTCTCAAACAATGATGAAAAAAATTGTGAGACTAATGGGGACCTTAAAAGGAAACAATCTGAAG
TAGTGTCTGAAGGACGACATCCAACTAAGTTTCCAAAAAGTGGTCGGGACAATCAGCAGTCATCATTTAATAATGGTAAAGGATTCTTCAAGAAACCAAAGGGTGAAAAT
CTGGACTGGAATGTCCTTAGGCCCTCTAAGACTCCAAATAAGAGGGGATAACCTTGTATAGTAGAGTCTTTAGATGGGTGGAGAATCCAGTTCCTATGCTCTTGGGAAAT
TGTTTCGACTTCTTACCATATTTTGTAGTTAAATAGGACTGTTAAACGTTACCTGAACAATTAATTGAAGGTTCCATTTAACGTATCTTATCTTCAAAAATTAGATGTAC
CCATATATCAACTCAGTGGTGTTCCTAAATTCATACATTCCTGTACTTGGATCAAGAATGACGCCCAATACTTGGAATACTGTCTGATTTTCTAAAAACTAGATTTCTGG
ACTATTCAGTTGTATTGCGAATGGAAAATAGATCCTGCAATTTTTTTTTAGCAAGCAATGAGAGTGGATCTTCTGTGATGATGGTATTTTATGAAATAGATCAGAATTCA
TCTGATTTCTTTTTGAGGCGTCCGCGCTCAAATATTAGAAATCATTTTAGTGCTCTG

Protein sequence

Show/hide protein sequence

MAKREISNTLRNLKGLNFLCFRSILSGTAELCSRFLCFDSGSCSAVLVKNQLLLLLLLISFMQRAAQKEEQPKKEEEVKPEENLFPSSNIIRNVVLVEGDPHPGALQGRL
SFQSFNPSIDKLNEEVASLGQRETPDPSSGNHSENVSSRENGSSRNEAVFSNNDEKNCETNGDLKRKQSEVVSEGRHPTKFPKSGRDNQQSSFNNGKGFFKKPKGENLDW
NVLRPSKTPNKRG

CmoCh02G007920 (gene) of Cucurbita moschata (Rifu) v1 genome