CuGenDBv2

Gene ID	CmoCh02G007960
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Rab5-interacting
Genome location	Cmo_Chr02:4912127..4916492
RNA-Seq Expression	CmoCh02G007960
Synteny	CmoCh02G007960
Gene Ontology terms	GO:0006996 - organelle organization (biological process) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR010742 - Rab5-interacting protein IPR029008 - Rab5-interacting protein family

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7035401.1 hypothetical protein SDJN02_02197 [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-65

99.22

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Query:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEANPVKFNLHQHQEHQ GHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

XP_022947918.1 uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita moschata]

3.0e-66

100

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Query:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

XP_023007370.1 uncharacterized protein C20orf24 homolog [Cucurbita maxima]

1.2e-65

98.45

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Query:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTS+VYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSL HF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

XP_023532324.1 uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita pepo subsp. pepo]

4.0e-66

99.22

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Query:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWIL+YSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

XP_038900616.1 respirasome Complex Assembly Factor 1-like [Benincasa hispida]

1.7e-64

96.9

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Query:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKE+ PVKFNLHQHQ+HQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KFE5 Uncharacterized protein

2.3e-64

96.12

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Query:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEA PVKFNLHQHQ+HQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAV+LGLLWG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

A0A1S4E4J0 uncharacterized protein C20orf24 homolog

1.8e-64

96.9

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Query:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEA PVKFNLHQHQ+HQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLLWG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

A0A5D3DK85 Rab5-interacting

1.8e-64

96.9

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Query:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEA PVKFNLHQHQ+HQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLLWG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

A0A6J1G7Y2 uncharacterized protein C20orf24 homolog isoform X2

1.5e-66

100

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Query:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

A0A6J1L2S3 uncharacterized protein C20orf24 homolog

5.6e-66

98.45

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Query:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTS+VYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSL HF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF

SwissProt top hits

e value

%identity

Alignment

Q9BUV8 Respirasome Complex Assembly Factor 1

4.3e-15

38.74

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Query:  NGHLAPFKLAKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL
        NG L     +K+   +A+W DKD+  DV++W RQ +AVVLG++WG +PL G +    F  I+  V+Y Y++  L++DEEE+GG   L +EG   S  LF+
Subjt:  NGHLAPFKLAKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL

Query:  LAWILVYSLAH
        +     ++  H
Subjt:  LAWILVYSLAH

Q9CQT9 Respirasome Complex Assembly Factor 1

4.2e-18

40.18

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Query:  NGHLAPFKLAKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL
        NG L     +K+   +A+W DKD+  DV++W RQ +A+VLG++WG +PL G +    F  I+  V+Y Y++  L++DEEE+GG   L +EG   S  LF+
Subjt:  NGHLAPFKLAKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL

Query:  LAWILVYSLAHF
        + WI+ Y+  H+
Subjt:  LAWILVYSLAHF

Arabidopsis top hits

e value

%identity

Alignment

AT2G29020.1 Rab5-interacting family protein

8.0e-49

69.92

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Query:  MKEANPVKFNLHQHQE----HQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEE
        MKE    K +  Q Q     HQN HL  F  AKLFD EASWDKDQLGDVLHWIRQ V ++ GLLWGAIPLVGGIW L+FLAIS+ +VYGYYA++LK+DEE
Subjt:  MKEANPVKFNLHQHQE----HQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEE

Query:  EFGGHGALLQEGLFASITLFLLAWILVYSLAHF
        +FGGH ALLQ+GLFAS++LFLLAWILVYSL+ F
Subjt:  EFGGHGALLQEGLFASITLFLLAWILVYSLAHF

AT5G59410.1 Rab5-interacting family protein

9.8e-55

77.69

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Query:  MKEANPVKFN-LHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFG
        MKE+   K N L Q + HQN HL+P KLAKLFDP+ASWDKDQLGDVLHWIRQ V ++ GLLWG+IPLVGGIW ++FLAIS+ +VYGYYAMILKVDEE+FG
Subjt:  MKEANPVKFN-LHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFG

Query:  GHGALLQEGLFASITLFLLAWILVYSLAHF
        GH ALLQEGLFAS+TLFLLAWILVYSLAHF
Subjt:  GHGALLQEGLFASITLFLLAWILVYSLAHF

Sequences

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CDS sequence

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mRNA sequence

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ATGCTCACAAACATCGATCGAATCTCAAATCTCTTCCTCGAACGTTTTGAAATTCGGACAAACACGCAGAAGAAAATTGAAAAAGTCGATCCGTTTTCTTATCACATTCG
TTCTCCTTTTCCGAAAACTGGTTTGATTGGATTATCCGGTATGAAAGAAGCGAATCCGGTTAAGTTCAATCTTCACCAGCATCAAGAGCACCAGAATGGTCACTTGGCCC
CGTTCAAGCTCGCTAAATTGTTCGATCCAGAGGCCTCCTGGGACAAGGATCAGCTAGGAGATGTTTTGCACTGGATTCGACAAGCAGTGGCCGTTGTACTCGGGCTGCTG
TGGGGCGCCATACCTTTGGTTGGAGGCATATGGTTTCTAATTTTCTTGGCGATATCGACCAGCGTAGTATATGGATACTATGCAATGATTTTAAAAGTTGATGAAGAAGA
ATTTGGAGGTCATGGAGCTCTTCTCCAAGAGGGGCTTTTTGCTTCTATAACTCTCTTTCTGCTTGCTTGGATTCTCGTATACAGCTTGGCACATTTTTGATCGGCGAAGA
ACGATTTTGCATCATGAAAGTACATGGTGAAGAAAAAAGAGACAGACAGGCTGCTAACTGACTGGACACGACATCGTGAATACGACCAGGTAAGCGGGAGATTAGAATCT
TTGTTAGTTTTTTGATACTAACTTTGGTCTGTTAAATTGTCCTTATAGAACAGAATCATTGTTGGGTCTATGCTGTATGTGCAATATTATTGGTGATGGATCCTTTTTTA
TGTCTACAACAGGTAACATGTTAGACCCATCCTCTTGTATTCCATCTCTAGTTAGTTTTTTTTATTCAAAATCTTCTTTAGGCCTACAGCATTATTTGCTGAATTTCGAT
TGAAAATTTTGTGATAGATTAATAAAGTATACGTCTGGAAAATATGAAGCCAACATTTCTG

Protein sequence

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MLTNIDRISNLFLERFEIRTNTQKKIEKVDPFSYHIRSPFPKTGLIGLSGMKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSLAHF

CmoCh02G007960 (gene) of Cucurbita moschata (Rifu) v1 genome