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CmoCh02G008000 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G008000
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpentatricopeptide repeat-containing protein At1g07590, mitochondrial
Genome locationCmo_Chr02:4930904..4934409
RNA-Seq ExpressionCmoCh02G008000
SyntenyCmoCh02G008000
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605456.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]4.7e-7697.33Show/hide
Query:  MFDGNRIERIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLEQSGPQNLDFPSPRVKSNLKTSQNQRPQNEVQNAAFTYDHKKKTY
        MFDGNRIERIERTPKEELVVYAFRSLM DGFPIRRGDICHSID LRKLERNKRTLEQ GPQNLDFPSPRVKSNLKTSQNQRPQNEVQNAAFTYDHKKKTY
Subjt:  MFDGNRIERIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLEQSGPQNLDFPSPRVKSNLKTSQNQRPQNEVQNAAFTYDHKKKTY

Query:  EDRNRTSQQRLNEDIPAKAPSRECICKRWLVREGSPAQEGPRKGKKKSNK
        EDRNRTSQ+RLNEDIPAKAPSRECICKRWLVREGSPAQEGPRKGKKKSNK
Subjt:  EDRNRTSQQRLNEDIPAKAPSRECICKRWLVREGSPAQEGPRKGKKKSNK
KAG7035404.1 putative serine/threonine-protein kinase PBL9 [Cucurbita argyrosperma subsp. argyrosperma]8.4e-6574.47Show/hide
Query:  MFDGNRIERIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLEQSGPQNLDFPSPRVKSNLKTSQNQRPQNEVQNAAFTYDHKKKTY
        MFDGNRIERIERTPKEELVVYAFRSLM DGFPIRRGDICHSID LRKLERNKRTLEQ GPQNLDFPSPRVKSNLKT              FTYDHKKKTY
Subjt:  MFDGNRIERIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLEQSGPQNLDFPSPRVKSNLKTSQNQRPQNEVQNAAFTYDHKKKTY

Query:  EDRNRTSQQRLNEDIPAKAPSRECICKRWLVREGSPAQEGPRKGKKKSNKGANRKLQKLAPPISNLPSIEPSESIGK--TEQYSVSDL
        EDR+RTSQ+RLNEDIPAKAPSRECICKRWLVREGSPAQEGPRKGKKKSNK         A   SN  S + ++ IG   T + S+S +
Subjt:  EDRNRTSQQRLNEDIPAKAPSRECICKRWLVREGSPAQEGPRKGKKKSNKGANRKLQKLAPPISNLPSIEPSESIGK--TEQYSVSDL
XP_023511959.1 pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Cucurbita pepo subsp. pepo]1.7e-0975Show/hide
Query:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
        RIER PK E V YAFRS M DGFPI RGDI H+I+RLRKLERNK  LE
Subjt:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
XP_031743136.1 pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Cucumis sativus]1.2e-1079.17Show/hide
Query:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
        RIER PK ELV YAFRS M DGFPI RGDI H+I+RLRKLERNKR LE
Subjt:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
XP_038902227.1 pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Benincasa hispida]5.9e-1077.08Show/hide
Query:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
        RIER PK E V YAFRS M DGFPI RGDI H+I+RLRKLERNKR LE
Subjt:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
TrEMBL top hitse value%identityAlignment
A0A0A0KFE9 Uncharacterized protein5.7e-1179.17Show/hide
Query:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
        RIER PK ELV YAFRS M DGFPI RGDI H+I+RLRKLERNKR LE
Subjt:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
A0A1S3CKS5 pentatricopeptide repeat-containing protein At1g07590, mitochondrial8.3e-1075Show/hide
Query:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
        RIER PK E V YAFRS M DGFPI RGDI H+I+RLRK ERNKR LE
Subjt:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
A0A5A7V3P3 Pentatricopeptide repeat-containing protein8.3e-1075Show/hide
Query:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
        RIER PK E V YAFRS M DGFPI RGDI H+I+RLRK ERNKR LE
Subjt:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
A0A6J1FT35 pentatricopeptide repeat-containing protein At1g07590, mitochondrial8.3e-1075Show/hide
Query:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
        RIER PK E V YAFRS M DGFPI RGDI H+I+RLRKLERNK  LE
Subjt:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
A0A6J1J8P8 pentatricopeptide repeat-containing protein At1g07590, mitochondrial8.3e-1075Show/hide
Query:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
        RIER PK E V YAFRS M DGFPI RGDI H+I+RLRKLERNK  LE
Subjt:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
SwissProt top hitse value%identityAlignment
Q940Q2 Pentatricopeptide repeat-containing protein At1g07590, mitochondrial9.8e-0858.33Show/hide
Query:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
        RIE+ PK   V  A +S M DGFP+  GD+ H+I+RLRKL RNKR LE
Subjt:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
Arabidopsis top hitse value%identityAlignment
AT1G07590.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.9e-0958.33Show/hide
Query:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE
        RIE+ PK   V  A +S M DGFP+  GD+ H+I+RLRKL RNKR LE
Subjt:  RIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGATGGAAATCGAATCGAGAGAATTGAGAGAACACCGAAGGAAGAATTGGTTGTGTATGCCTTCAGGAGCTTGATGAGCGACGGCTTTCCTATTCGTCGAGGCGA
CATATGTCACTCCATCGATCGCCTAAGGAAGCTTGAGAGGAACAAGCGCACACTCGAGCAATCAGGCCCACAAAATTTAGACTTCCCAAGTCCAAGAGTGAAGTCAAATC
TCAAAACTTCACAAAACCAGAGACCACAAAATGAAGTACAAAACGCAGCATTTACATACGATCACAAGAAAAAAACCTATGAAGACAGGAACAGGACATCCCAACAGAGA
TTGAATGAAGATATCCCAGCCAAGGCCCCTTCTCGTGAATGTATTTGCAAAAGATGGTTGGTCAGGGAAGGCTCTCCTGCACAGGAAGGGCCTCGAAAAGGGAAGAAGAA
GAGCAATAAAGGAGCAAATAGAAAGCTTCAAAAGCTAGCTCCCCCCATCTCAAATCTTCCTTCCATTGAACCTTCTGAGAGTATTGGGAAAACAGAGCAATACTCTGTTT
CAGACCTTGTTTTTTTTTTGCTTATACGAGAAGAAAAATTGCTAAAGCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGATGGAAATCGAATCGAGAGAATTGAGAGAACACCGAAGGAAGAATTGGTTGTGTATGCCTTCAGGAGCTTGATGAGCGACGGCTTTCCTATTCGTCGAGGCGA
CATATGTCACTCCATCGATCGCCTAAGGAAGCTTGAGAGGAACAAGCGCACACTCGAGCAATCAGGCCCACAAAATTTAGACTTCCCAAGTCCAAGAGTGAAGTCAAATC
TCAAAACTTCACAAAACCAGAGACCACAAAATGAAGTACAAAACGCAGCATTTACATACGATCACAAGAAAAAAACCTATGAAGACAGGAACAGGACATCCCAACAGAGA
TTGAATGAAGATATCCCAGCCAAGGCCCCTTCTCGTGAATGTATTTGCAAAAGATGGTTGGTCAGGGAAGGCTCTCCTGCACAGGAAGGGCCTCGAAAAGGGAAGAAGAA
GAGCAATAAAGGAGCAAATAGAAAGCTTCAAAAGCTAGCTCCCCCCATCTCAAATCTTCCTTCCATTGAACCTTCTGAGAGTATTGGGAAAACAGAGCAATACTCTGTTT
CAGACCTTGTTTTTTTTTTGCTTATACGAGAAGAAAAATTGCTAAAGCTCTGA
Protein sequenceShow/hide protein sequence
MFDGNRIERIERTPKEELVVYAFRSLMSDGFPIRRGDICHSIDRLRKLERNKRTLEQSGPQNLDFPSPRVKSNLKTSQNQRPQNEVQNAAFTYDHKKKTYEDRNRTSQQR
LNEDIPAKAPSRECICKRWLVREGSPAQEGPRKGKKKSNKGANRKLQKLAPPISNLPSIEPSESIGKTEQYSVSDLVFFLLIREEKLLKL