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CmoCh02G008140 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G008140
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationCmo_Chr02:4982851..4983285
RNA-Seq ExpressionCmoCh02G008140
SyntenyCmoCh02G008140
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR000225 - Armadillo
IPR011989 - Armadillo-like helical
IPR016024 - Armadillo-type fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570713.1 U-box domain-containing protein 13, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2446.37Show/hide
Query:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDKPYWP-----------------
        M+CRAAPGIVH L  GSMEARENAAATLFSLSVVDEYK                            +ALFNLCFY+G+K                     
Subjt:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDKPYWP-----------------

Query:  ----------AIL-------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA
                  AIL             + VP LV  I TGSPRNRENAAAVL+++C GD+RH+VEA++ GV SLL IDLA
Subjt:  ----------AIL-------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA

KAG6605467.1 U-box domain-containing protein 13, partial [Cucurbita argyrosperma subsp. sororia]6.2e-4187.85Show/hide
Query:  APGIVHELNSGSMEARENAAATLFSLSVVDEYKTSALFNLCFYRGDKPYWPAILKDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTS
        APGIVHEL SGSMEARENAAATLFSLSVVDEYKT+ALFNLCFYRGD        KDVPVLVDFIATG PRNRENAAAVLVNLCAGDKRHLVEA+KPGVTS
Subjt:  APGIVHELNSGSMEARENAAATLFSLSVVDEYKTSALFNLCFYRGDKPYWPAILKDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTS

Query:  LLMIDLA
        LL IDLA
Subjt:  LLMIDLA

KAG7035412.1 U-box domain-containing protein 13, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-4185.71Show/hide
Query:  APGIVHELNSGSMEARENAAATLFSLSVVDEYKTSALFNLCFYRGDKPYWPAI-----LKDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARK
        APGIVHEL SGSMEARENAAATLFSLSVVDEYKT+ALFNLCFYR DK    +I     LKDVPVLVDFIATG PRNRENAAAVLVNLCAGDKRHLVEA+K
Subjt:  APGIVHELNSGSMEARENAAATLFSLSVVDEYKTSALFNLCFYRGDKPYWPAI-----LKDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARK

Query:  PGVTSLLMIDLA
        PGVTSLL IDLA
Subjt:  PGVTSLLMIDLA

XP_004143106.1 U-box domain-containing protein 13 [Cucumis sativus]4.7e-2546.37Show/hide
Query:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------
        M+CRAAPGIVH L  GSMEARENAAATLFSLSVVDEYK                            +ALFNLCF++G+K                     
Subjt:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------

Query:  ---PYWPAIL----------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA
               AIL                + VP+LV+ I TGSPRNRENAAAVLV+LC GDKRHLVEA++ GV  LL +D+A
Subjt:  ---PYWPAIL----------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA

XP_038901464.1 U-box domain-containing protein 13-like [Benincasa hispida]1.4e-2446.37Show/hide
Query:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------
        M+CRA P IVH L  GSMEARENAAATLFSLSVVDEYK                            +ALFNLCF++G+K                     
Subjt:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------

Query:  ---PYWPAIL----------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA
               AIL                + VP+LV+FI TGSPRNRENAAAVLV+LC GDKRHLV+A++ GV  LLM DLA
Subjt:  ---PYWPAIL----------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA

TrEMBL top hitse value%identityAlignment
A0A0A0KFG3 RING-type E3 ubiquitin transferase2.3e-2546.37Show/hide
Query:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------
        M+CRAAPGIVH L  GSMEARENAAATLFSLSVVDEYK                            +ALFNLCF++G+K                     
Subjt:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------

Query:  ---PYWPAIL----------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA
               AIL                + VP+LV+ I TGSPRNRENAAAVLV+LC GDKRHLVEA++ GV  LL +D+A
Subjt:  ---PYWPAIL----------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA

A0A1S3BJL0 RING-type E3 ubiquitin transferase8.7e-2546.29Show/hide
Query:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------
        M CRAAP IVH L  GSMEARENAAATLFSLSVVDEYK                            +ALFNLCF++G+K                     
Subjt:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------

Query:  ---PYWPAIL----------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLM
               AIL                + VP+LV+ I TGSPRNRENAAAVLV+LC GDKRHLVEA++ GV  LLM
Subjt:  ---PYWPAIL----------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLM

A0A5A7V197 RING-type E3 ubiquitin transferase8.7e-2546.29Show/hide
Query:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------
        M CRAAP IVH L  GSMEARENAAATLFSLSVVDEYK                            +ALFNLCF++G+K                     
Subjt:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------

Query:  ---PYWPAIL----------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLM
               AIL                + VP+LV+ I TGSPRNRENAAAVLV+LC GDKRHLVEA++ GV  LLM
Subjt:  ---PYWPAIL----------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLM

A0A6J1D426 RING-type E3 ubiquitin transferase4.3e-2446.37Show/hide
Query:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDKPYWP-----------------
        M+CRA PGIVH L  GSMEARENAA TLFSLSVVDEYK                            +ALFNLCF++G+K                     
Subjt:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDKPYWP-----------------

Query:  ----------AIL-------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA
                  AIL             + VPVL++FIA  SPRNRENAAAVLV+LCA DKRHLVEA + GV +LL IDLA
Subjt:  ----------AIL-------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA

A0A6J1FVM5 RING-type E3 ubiquitin transferase1.1e-2444.89Show/hide
Query:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDKPYWP-----------------
        M+CRAAPGIVH L  GSMEARENAAATLFSLSVVDEYK                            +ALFNLCFY+G+K                     
Subjt:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDKPYWP-----------------

Query:  ----------AIL-------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMI
                  AIL             + VP LV  I TGSPRNRENAAAVL+++C GD+RH+VEA++ GV SLL++
Subjt:  ----------AIL-------------KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMI

SwissProt top hitse value%identityAlignment
A2ZLU6 Protein spotted leaf 113.4e-1837.5Show/hide
Query:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK-------------------------
        A P IVH L +GSMEARENAAATLFSLSV+DEYK                            +ALFNLC Y+G+K                         
Subjt:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK-------------------------

Query:  ------------PYWPAIL---KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKR--HLVEARKPGV
                    P   A +   + VPVLV+ I +G+PRNRENAAAV+++LC+G+    HL  A++ G+
Subjt:  ------------PYWPAIL---KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKR--HLVEARKPGV

Q0IMG9 E3 ubiquitin-protein ligase SPL113.4e-1837.5Show/hide
Query:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK-------------------------
        A P IVH L +GSMEARENAAATLFSLSV+DEYK                            +ALFNLC Y+G+K                         
Subjt:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK-------------------------

Query:  ------------PYWPAIL---KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKR--HLVEARKPGV
                    P   A +   + VPVLV+ I +G+PRNRENAAAV+++LC+G+    HL  A++ G+
Subjt:  ------------PYWPAIL---KDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKR--HLVEARKPGV

Q8VZ40 U-box domain-containing protein 141.0e-1436.97Show/hide
Query:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDKPY---------WPAILKD-------
        A   IV  L +GSMEARENAAATLFSLSV+DE K                            +A+FNLC Y+G+K              +LKD       
Subjt:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDKPY---------WPAILKD-------

Query:  ------------------------VPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPG
                                +PVLV+ I TGSPRNRENAAA+L  LC G+   L  AR+ G
Subjt:  ------------------------VPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPG

Q9SNC6 U-box domain-containing protein 132.3e-2243.43Show/hide
Query:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK-------------------------
        A PGIV  L  GSMEARENAAATLFSLSV+DE K                            +ALFNLC Y+G+K                         
Subjt:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK-------------------------

Query:  ------------PYWPAILKD---VPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA
                    P   AI+     VP LV+FI TGSPRNRENAAAVLV+LC+GD +HLVEA+K G+   L IDLA
Subjt:  ------------PYWPAILKD---VPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA

Q9ZV31 U-box domain-containing protein 128.7e-2239.77Show/hide
Query:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------PYWPAILKD-------
        A PGIVH L  GSMEARENAAATLFSLSV+DE K                            +ALFNLC ++G+K         P    +L +       
Subjt:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------PYWPAILKD-------

Query:  ------------------------VPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLM
                                VPVLVDFI +GSPRN+EN+AAVLV+LC+ +++HL+EA+K G+  LL+
Subjt:  ------------------------VPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLM

Arabidopsis top hitse value%identityAlignment
AT1G71020.1 ARM repeat superfamily protein3.8e-1232.39Show/hide
Query:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------
        M   A   IV  L +GSMEARENAAATLFSLS+ DE K                            +ALFNLC Y+G+K                     
Subjt:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------

Query:  ------------------PYWPAILK--DVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLM
                              AIL+   +P L+D +    PRNRENAAA+L+ LC  D   L+   + G    LM
Subjt:  ------------------PYWPAILK--DVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLM

AT1G71020.2 ARM repeat superfamily protein3.8e-1232.39Show/hide
Query:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------
        M   A   IV  L +GSMEARENAAATLFSLS+ DE K                            +ALFNLC Y+G+K                     
Subjt:  MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------------------

Query:  ------------------PYWPAILK--DVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLM
                              AIL+   +P L+D +    PRNRENAAA+L+ LC  D   L+   + G    LM
Subjt:  ------------------PYWPAILK--DVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLM

AT2G28830.1 PLANT U-BOX 126.2e-2339.77Show/hide
Query:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------PYWPAILKD-------
        A PGIVH L  GSMEARENAAATLFSLSV+DE K                            +ALFNLC ++G+K         P    +L +       
Subjt:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK---------PYWPAILKD-------

Query:  ------------------------VPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLM
                                VPVLVDFI +GSPRN+EN+AAVLV+LC+ +++HL+EA+K G+  LL+
Subjt:  ------------------------VPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLM

AT3G46510.1 plant U-box 131.6e-2343.43Show/hide
Query:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK-------------------------
        A PGIV  L  GSMEARENAAATLFSLSV+DE K                            +ALFNLC Y+G+K                         
Subjt:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDK-------------------------

Query:  ------------PYWPAILKD---VPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA
                    P   AI+     VP LV+FI TGSPRNRENAAAVLV+LC+GD +HLVEA+K G+   L IDLA
Subjt:  ------------PYWPAILKD---VPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMIDLA

AT3G54850.1 plant U-box 147.3e-1636.97Show/hide
Query:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDKPY---------WPAILKD-------
        A   IV  L +GSMEARENAAATLFSLSV+DE K                            +A+FNLC Y+G+K              +LKD       
Subjt:  AAPGIVHELNSGSMEARENAAATLFSLSVVDEYK---------------------------TSALFNLCFYRGDKPY---------WPAILKD-------

Query:  ------------------------VPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPG
                                +PVLV+ I TGSPRNRENAAA+L  LC G+   L  AR+ G
Subjt:  ------------------------VPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTGTAGGGCAGCACCTGGCATAGTCCATGAGCTGAATTCGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCTGTTGTCGACGAATA
TAAAACAAGTGCTCTTTTCAACTTGTGTTTCTACCGAGGGGACAAGCCATACTGGCCAGCAATTCTGAAGGACGTCCCCGTTTTAGTCGATTTCATTGCAACAGGATCCC
CTAGGAACAGGGAGAATGCAGCTGCAGTTTTAGTGAATCTTTGTGCAGGAGACAAGCGACATCTCGTGGAAGCAAGGAAGCCCGGAGTGACTAGTTTGCTAATGATAGAT
TTGGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGACCTGTAGGGCAGCACCTGGCATAGTCCATGAGCTGAATTCGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCTGTTGTCGACGAATA
TAAAACAAGTGCTCTTTTCAACTTGTGTTTCTACCGAGGGGACAAGCCATACTGGCCAGCAATTCTGAAGGACGTCCCCGTTTTAGTCGATTTCATTGCAACAGGATCCC
CTAGGAACAGGGAGAATGCAGCTGCAGTTTTAGTGAATCTTTGTGCAGGAGACAAGCGACATCTCGTGGAAGCAAGGAAGCCCGGAGTGACTAGTTTGCTAATGATAGAT
TTGGCATAA
Protein sequenceShow/hide protein sequence
MTCRAAPGIVHELNSGSMEARENAAATLFSLSVVDEYKTSALFNLCFYRGDKPYWPAILKDVPVLVDFIATGSPRNRENAAAVLVNLCAGDKRHLVEARKPGVTSLLMID
LA