CuGenDBv2

Gene ID	CmoCh02G008220
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	histone H4
Genome location	Cmo_Chr02:5010884..5013465
RNA-Seq Expression	CmoCh02G008220
Synteny	CmoCh02G008220
Gene Ontology terms	GO:0006352 - DNA-templated transcription, initiation (biological process) GO:0006886 - intracellular protein transport (biological process) GO:0090114 - COPII-coated vesicle budding (biological process) GO:0000786 - nucleosome (cellular component) GO:0005654 - nucleoplasm (cellular component) GO:0005789 - endoplasmic reticulum membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030127 - COPII vesicle coat (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR001951 - Histone H4 IPR009072 - Histone-fold IPR019809 - Histone H4, conserved site IPR035425 - CENP-T/Histone H4, histone fold

Homology

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GenBank top hits

e value

%identity

Alignment

KAB5538886.1 hypothetical protein DKX38_016419 [Salix brachista]

1.5e-48

87.1

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGGFL----LIIIEVGIEVGFSQA
        FGG +      ++  GIE G  +A
Subjt:  FGGFL----LIIIEVGIEVGFSQA

KAB5556801.1 hypothetical protein DKX38_007710 [Salix brachista]

9.0e-49

88.24

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGGFLLIIIEVGIEVGFSQ
        FGG +L+ +   ++   S+
Subjt:  FGGFLLIIIEVGIEVGFSQ

KAE8646972.1 hypothetical protein Csa_021021 [Cucumis sativus]

1.2e-48

86.51

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGGFLLIIIEVGIEVGFSQAVKGMRA
        FG F L  I+     G S  +KG+++
Subjt:  FGGFLLIIIEVGIEVGFSQAVKGMRA

RXN04959.1 histone H4-like protein [Labeo rohita]

9.0e-49

69.81

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGGFLLIIIEVGIEVGFSQAVKGMRAENLSRSYPQLDMAHGSEKDLDHLGTGTSLPKTE
        FGG  L           SQ    + + +  R  P+ +   GS +D D L     +  ++
Subjt:  FGGFLLIIIEVGIEVGFSQAVKGMRAENLSRSYPQLDMAHGSEKDLDHLGTGTSLPKTE

XP_009169046.1 hypothetical protein T265_05709 [Opisthorchis viverrini]

4.1e-49

68.9

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGGFLLIIIEVGIEVGFSQAVKGMRAENLSRS-----YPQLDMAHGSEKDLDHLGTGTSLPKTE
        FG F         +  FS+  +    + + RS     YP  D +H  ++    L   ++ P+TE
Subjt:  FGGFLLIIIEVGIEVGFSQAVKGMRAENLSRS-----YPQLDMAHGSEKDLDHLGTGTSLPKTE

TrEMBL top hits

e value

%identity

Alignment

A0A075AEX9 Histone H4

2.0e-49

68.9

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGGFLLIIIEVGIEVGFSQAVKGMRAENLSRS-----YPQLDMAHGSEKDLDHLGTGTSLPKTE
        FG F         +  FS+  +    + + RS     YP  D +H  ++    L   ++ P+TE
Subjt:  FGGFLLIIIEVGIEVGFSQAVKGMRAENLSRS-----YPQLDMAHGSEKDLDHLGTGTSLPKTE

A0A498L9T6 Histone H4

4.4e-49

69.81

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGGFLLIIIEVGIEVGFSQAVKGMRAENLSRSYPQLDMAHGSEKDLDHLGTGTSLPKTE
        FGG  L           SQ    + + +  R  P+ +   GS +D D L     +  ++
Subjt:  FGGFLLIIIEVGIEVGFSQAVKGMRAENLSRSYPQLDMAHGSEKDLDHLGTGTSLPKTE

A0A5N5L9S0 Histone H4

7.5e-49

87.1

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGGFL----LIIIEVGIEVGFSQA
        FGG +      ++  GIE G  +A
Subjt:  FGGFL----LIIIEVGIEVGFSQA

A0A5N5MRH8 Histone H4

4.4e-49

88.24

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGGFLLIIIEVGIEVGFSQ
        FGG +L+ +   ++   S+
Subjt:  FGGFLLIIIEVGIEVGFSQ

A0A6J3B9V3 Histone H4

1.3e-48

72.61

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGGFLLIIIEVGIEVGFSQAVKGMRAENLSRSYPQLDMAHGSEK-DLDHLGTGTSLP
        FGG+      V  ++  ++AV+G      S +   +D  HG ++  L  LG G  +P
Subjt:  FGGFLLIIIEVGIEVGFSQAVKGMRAENLSRSYPQLDMAHGSEK-DLDHLGTGTSLP

SwissProt top hits

e value

%identity

Alignment

P59259 Histone H4

2.2e-50

100

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

P62785 Histone H4 variant TH011

2.2e-50

100

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

Q6LAF3 Histone H4

2.2e-50

100

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

Q6PMI5 Histone H4

2.2e-50

100

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

Q6WZ83 Histone H4

2.2e-50

100

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

Arabidopsis top hits

e value

%identity

Alignment

AT1G07660.1 Histone superfamily protein

1.6e-51

100

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

AT1G07820.1 Histone superfamily protein

1.6e-51

100

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

AT1G07820.2 Histone superfamily protein

1.6e-51

100

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

AT2G28740.1 histone H4

1.6e-51

100

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

AT3G45930.1 Histone superfamily protein

1.6e-51

100

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Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTGGACGCGGTAAGGGAGGCAAGGGCTTGGGAAAGGGAGGAGCAAAGCGTCACAGGAAGGTTTTGAGAGACAACATTCAGGGAATCACCAAGCCTGCTATT
CGCCGTTTGGCTCGTAGAGGTGGCGTCAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTTTTGAAGATCTTCCTTGAGAATGTGATTCGTGATGCT
GTTACCTACACTGAGCATGCGAGGAGGAAGACTGTGACTGCTATGGATGTGGTTTATGCCTTGAAAAGGCAGGGGAGGACTTTGTATGGTTTCGGAGGTTTTTTG
CTAATCATCATTGAAGTGGGTATAGAGGTGGGATTCTCTCAAGCGGTCAAGGGCATGCGTGCAGAGAACTTATCTAGATCCTATCCTCAATTGGACATGGCTCAT
GGCTCAGAAAAGGACTTAGACCATCTAGGAACCGGCACCAGCCTGCCCAAAACGGAACCGCTGGAAATACTCATTTGA

mRNA sequence

Show/hide mRNA sequence

TTTCGAATCTAATCTCTTACTGTTCGTTCTCCTTAATCGTTCGTGAAAATGTCTGGACGCGGTAAGGGAGGCAAGGGCTTGGGAAAGGGAGGAGCAAAGCGTCAC
AGGAAGGTTTTGAGAGACAACATTCAGGGAATCACCAAGCCTGCTATTCGCCGTTTGGCTCGTAGAGGTGGCGTCAAGCGTATCAGTGGATTGATCTATGAAGAA
ACCAGAGGTGTTTTGAAGATCTTCCTTGAGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCGAGGAGGAAGACTGTGACTGCTATGGATGTGGTTTAT
GCCTTGAAAAGGCAGGGGAGGACTTTGTATGGTTTCGGAGGTTTTTTGCTAATCATCATTGAAGTGGGTATAGAGGTGGGATTCTCTCAAGCGGTCAAGGGCATG
CGTGCAGAGAACTTATCTAGATCCTATCCTCAATTGGACATGGCTCATGGCTCAGAAAAGGACTTAGACCATCTAGGAACCGGCACCAGCCTGCCCAAAACGGAA
CCGCTGGAAATACTCATTTGA

Protein sequence

Show/hide protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFL
LIIIEVGIEVGFSQAVKGMRAENLSRSYPQLDMAHGSEKDLDHLGTGTSLPKTEPLEILI

CmoCh02G008220 (gene) of Cucurbita moschata (Rifu) v1 genome