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CmoCh02G008540 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G008540
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
Genome locationCmo_Chr02:5199094..5199840
RNA-Seq ExpressionCmoCh02G008540
SyntenyCmoCh02G008540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605506.1 Phototropin-1, partial [Cucurbita argyrosperma subsp. sororia]2.7e-5484.33Show/hide
Query:  MHDSNCDLLQTSDPRSSLRKRDHKKLAEKWIHSIHLILLLIQRSRTEGIRAVHSSEFLKAPKHNDNVELAVFGFRHGSSPRNLTSSGARDSRIPTKVNWA
        MHDSNCDLLQTSDPRSSLRKRDHKKLAEKWIHSIHLILLLIQRSRTE IRAVHSSEFLKAPKHNDNVELAVFGFRHGSSPRNLTSSGARDSRIPTKVNWA
Subjt:  MHDSNCDLLQTSDPRSSLRKRDHKKLAEKWIHSIHLILLLIQRSRTEGIRAVHSSEFLKAPKHNDNVELAVFGFRHGSSPRNLTSSGARDSRIPTKVNWA

Query:  GPLKCIGLREPGPSQPSPAQKKPLPQTTNATSSP
        GPLKCIGLRE    +     +KP+P+++     P
Subjt:  GPLKCIGLREPGPSQPSPAQKKPLPQTTNATSSP

KAG7010594.1 hypothetical protein SDJN02_27388, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-1347.41Show/hide
Query:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSSEFLKAPKHNDNVELAVF---GFRHGSSPRN
        M DS+  +L  SDP  S RKRDH    K +E+WIH I LILLL+               +  GI+AV++SEF +APK+ D+VELA+    G +  SSP N
Subjt:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSSEFLKAPKHNDNVELAVF---GFRHGSSPRN

Query:  LTSSGARDSRIPTKVN
        LTS GARD R P K+N
Subjt:  LTSSGARDSRIPTKVN

XP_022986953.1 uncharacterized protein LOC111484535 isoform X1 [Cucurbita maxima]1.3e-1146.55Show/hide
Query:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSSEFLKAPKHNDNVELAVF---GFRHGSSPRN
        M DS+   L  SDP  S RKRDH    K +E+WIH I LILLL+               +  GI+AV++SEF +APK+ D+VELA+    G +  SSP N
Subjt:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSSEFLKAPKHNDNVELAVF---GFRHGSSPRN

Query:  LTSSGARDSRIPTKVN
        LTS GARD R P  +N
Subjt:  LTSSGARDSRIPTKVN

XP_022986954.1 uncharacterized protein LOC111484535 isoform X2 [Cucurbita maxima]1.3e-1147.37Show/hide
Query:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSSEFLKAPKHNDNVELAVF---GFRHGSSPRN
        M DS+   L  SDP  S RKRDH    K +E+WIH I LILLL+               +  GI+AV++SEF +APK+ D+VELA+    G +  SSP N
Subjt:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSSEFLKAPKHNDNVELAVF---GFRHGSSPRN

Query:  LTSSGARDSRIPTK
        LTS GARD R P K
Subjt:  LTSSGARDSRIPTK

XP_038902298.1 uncharacterized protein LOC120088933 [Benincasa hispida]5.8e-1247.01Show/hide
Query:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSS-EFLKAPKHNDNVELAVF---GFRHGSSPR
        M DSN  LL  SDPR S +KRDH    + AE+WIH I LILLLI               +   I AV+++ +F +APK+ D+VELAV    G +  SSP 
Subjt:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSS-EFLKAPKHNDNVELAVF---GFRHGSSPR

Query:  NLTSSGARDSRIPTKVN
        N+TS G RD RIP+KV+
Subjt:  NLTSSGARDSRIPTKVN

TrEMBL top hitse value%identityAlignment
A0A1S3CKP4 uncharacterized protein LOC103501898 isoform X27.1e-0846.79Show/hide
Query:  DLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI---------QRSRTEGIRAVHSSEFL-KAPKHNDNVELAVF---GFRHGSSPRNLTSSGARD
        DLL  SDPR S+RKRD     +    WIH I LILLLI            +  GIRA +  E L + PK+ D+ ELAV    G    SSP NLTS G RD
Subjt:  DLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI---------QRSRTEGIRAVHSSEFL-KAPKHNDNVELAVF---GFRHGSSPRNLTSSGARD

Query:  SR-IPTKVN
        SR IP+K++
Subjt:  SR-IPTKVN

A0A5D3CTN8 Uncharacterized protein7.1e-0846.79Show/hide
Query:  DLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI---------QRSRTEGIRAVHSSEFL-KAPKHNDNVELAVF---GFRHGSSPRNLTSSGARD
        DLL  SDPR S+RKRD     +    WIH I LILLLI            +  GIRA +  E L + PK+ D+ ELAV    G    SSP NLTS G RD
Subjt:  DLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI---------QRSRTEGIRAVHSSEFL-KAPKHNDNVELAVF---GFRHGSSPRNLTSSGARD

Query:  SR-IPTKVN
        SR IP+K++
Subjt:  SR-IPTKVN

A0A6J1FUE4 uncharacterized protein LOC1114488845.3e-1145.22Show/hide
Query:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSSEFLKAPKHNDNVELAVF---GFRHGSSPRN
        M DS+  +L  SDP  S RKRDH    K +E+WIH I LILLL+               +  GI+AV++SEF +APK+ D+VELA+    G +  SSP N
Subjt:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSSEFLKAPKHNDNVELAVF---GFRHGSSPRN

Query:  LTSSGARDSRIPTKV
        LTS G RD   P K+
Subjt:  LTSSGARDSRIPTKV

A0A6J1JHI4 uncharacterized protein LOC111484535 isoform X26.2e-1247.37Show/hide
Query:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSSEFLKAPKHNDNVELAVF---GFRHGSSPRN
        M DS+   L  SDP  S RKRDH    K +E+WIH I LILLL+               +  GI+AV++SEF +APK+ D+VELA+    G +  SSP N
Subjt:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSSEFLKAPKHNDNVELAVF---GFRHGSSPRN

Query:  LTSSGARDSRIPTK
        LTS GARD R P K
Subjt:  LTSSGARDSRIPTK

A0A6J1JI18 uncharacterized protein LOC111484535 isoform X16.2e-1246.55Show/hide
Query:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSSEFLKAPKHNDNVELAVF---GFRHGSSPRN
        M DS+   L  SDP  S RKRDH    K +E+WIH I LILLL+               +  GI+AV++SEF +APK+ D+VELA+    G +  SSP N
Subjt:  MHDSNCDLLQTSDPRSSLRKRDHK---KLAEKWIHSIHLILLLI------------QRSRTEGIRAVHSSEFLKAPKHNDNVELAVF---GFRHGSSPRN

Query:  LTSSGARDSRIPTKVN
        LTS GARD R P  +N
Subjt:  LTSSGARDSRIPTKVN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACGATTCCAACTGCGATCTTCTTCAAACTTCCGATCCTCGCTCCTCCTTAAGGAAGCGAGATCATAAAAAATTAGCTGAGAAGTGGATTCATTCGATTCATTTGAT
TCTGCTCCTTATCCAGAGATCAAGGACGGAAGGAATTAGAGCAGTTCATTCAAGCGAGTTTCTGAAGGCGCCGAAGCACAACGACAATGTCGAACTTGCCGTCTTCGGAT
TCCGGCATGGTTCGAGTCCTCGGAATCTAACCAGCAGCGGCGCTCGAGACTCACGGATACCGACCAAGGTCAATTGGGCCGGTCCATTGAAATGTATTGGGCTACGAGAG
CCAGGCCCATCCCAGCCCAGCCCAGCCCAAAAAAAACCTTTACCTCAAACAACCAATGCCACGTCATCGCCGGGACCAATATCAGGCCAAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCACGATTCCAACTGCGATCTTCTTCAAACTTCCGATCCTCGCTCCTCCTTAAGGAAGCGAGATCATAAAAAATTAGCTGAGAAGTGGATTCATTCGATTCATTTGAT
TCTGCTCCTTATCCAGAGATCAAGGACGGAAGGAATTAGAGCAGTTCATTCAAGCGAGTTTCTGAAGGCGCCGAAGCACAACGACAATGTCGAACTTGCCGTCTTCGGAT
TCCGGCATGGTTCGAGTCCTCGGAATCTAACCAGCAGCGGCGCTCGAGACTCACGGATACCGACCAAGGTCAATTGGGCCGGTCCATTGAAATGTATTGGGCTACGAGAG
CCAGGCCCATCCCAGCCCAGCCCAGCCCAAAAAAAACCTTTACCTCAAACAACCAATGCCACGTCATCGCCGGGACCAATATCAGGCCAAAATTAA
Protein sequenceShow/hide protein sequence
MHDSNCDLLQTSDPRSSLRKRDHKKLAEKWIHSIHLILLLIQRSRTEGIRAVHSSEFLKAPKHNDNVELAVFGFRHGSSPRNLTSSGARDSRIPTKVNWAGPLKCIGLRE
PGPSQPSPAQKKPLPQTTNATSSPGPISGQN