CuGenDBv2

Gene ID	CmoCh02G008600
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	DNA repair protein RAD51-like protein 2
Genome location	Cmo_Chr02:5239238..5239879
RNA-Seq Expression	CmoCh02G008600
Synteny	CmoCh02G008600
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0033063 - Rad51B-Rad51C-Rad51D-XRCC2 complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domains	IPR013632 - DNA recombination and repair protein Rad51-like, C-terminal IPR027417 - P-loop containing nucleoside triphosphate hydrolase IPR030548 - DNA repair protein RAD51 homologue 2

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605511.1 DNA repair protein RAD51-like 2, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-22

84.29

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Query:  FLVVEFQFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAGLSCH
        ++   F+FCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQE    +CH
Subjt:  FLVVEFQFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAGLSCH

XP_038901703.1 DNA repair protein RAD51 homolog 2 isoform X1 [Benincasa hispida]

8.2e-20

88.33

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFCLKLS LAALPPSYG LDGRVIYIDVESKFSSRRMIEI MRSFPDV   KD+AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

XP_038901709.1 DNA repair protein RAD51 homolog 2 isoform X2 [Benincasa hispida]

8.2e-20

88.33

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFCLKLS LAALPPSYG LDGRVIYIDVESKFSSRRMIEI MRSFPDV   KD+AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

XP_038901711.1 DNA repair protein RAD51 homolog 2 isoform X3 [Benincasa hispida]

8.2e-20

88.33

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFCLKLS LAALPPSYG LDGRVIYIDVESKFSSRRMIEI MRSFPDV   KD+AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

XP_038901712.1 DNA repair protein RAD51 homolog 2 isoform X4 [Benincasa hispida]

8.2e-20

88.33

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFCLKLS LAALPPSYG LDGRVIYIDVESKFSSRRMIEI MRSFPDV   KD+AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KFZ1 RECA_2 domain-containing protein

8.9e-20

86.67

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFCLKLS LAALPPSYG LDGRVIYIDVESKFSS+RMIEI MRSFPDV   KD+AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

A0A6J1CWT5 DNA repair protein RAD51 homolog 2 isoform X2

8.9e-20

88.33

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFCLKLSLLAALPPSYG L GRVIYIDVESKFSSRRMIEI MRSFPDV   KD+AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

A0A6J1CY45 DNA repair protein RAD51 homolog 2 isoform X1

8.9e-20

88.33

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFCLKLSLLAALPPSYG L GRVIYIDVESKFSSRRMIEI MRSFPDV   KD+AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

A0A6J1CY51 DNA repair protein RAD51 homolog 2 isoform X4

8.9e-20

88.33

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFCLKLSLLAALPPSYG L GRVIYIDVESKFSSRRMIEI MRSFPDV   KD+AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

A0A6J1CYS7 DNA repair protein RAD51 homolog 2 isoform X3

8.9e-20

88.33

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFCLKLSLLAALPPSYG L GRVIYIDVESKFSSRRMIEI MRSFPDV   KD+AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

SwissProt top hits

e value

%identity

Alignment

O15315 DNA repair protein RAD51 homolog 2

3.7e-07

52.17

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFP
        QFC+ +S+LA LP + G L+G V+YID ES FS+ R++EI    FP
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFP

O35719 DNA repair protein RAD51 homolog 2

3.7e-07

45.28

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKD
        QFC+ +S+LA LP S G L+G V+YID ES F++ R++EI    FP     ++
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKD

Q9SK02 DNA repair protein RAD51 homolog 2

5.2e-17

68.33

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFC+KL+L A+ P +YG LDGRVIYIDVESKFSSRR+IE+ + SFP+V  +K +AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

Arabidopsis top hits

e value

%identity

Alignment

AT2G28560.1 DNA repair (Rad51) family protein

3.7e-18

68.33

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFC+KL+L A+ P +YG LDGRVIYIDVESKFSSRR+IE+ + SFP+V  +K +AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

AT2G28560.2 DNA repair (Rad51) family protein

3.7e-18

68.33

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFC+KL+L A+ P +YG LDGRVIYIDVESKFSSRR+IE+ + SFP+V  +K +AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

AT2G28560.3 DNA repair (Rad51) family protein

3.7e-18

68.33

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFC+KL+L A+ P +YG LDGRVIYIDVESKFSSRR+IE+ + SFP+V  +K +AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

AT2G28560.4 DNA repair (Rad51) family protein

3.7e-18

68.33

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Query:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG
        QFC+KL+L A+ P +YG LDGRVIYIDVESKFSSRR+IE+ + SFP+V  +K +AQEMAG
Subjt:  QFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAG

Sequences

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CDS sequence

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ATGCGACTTTTTCTGGTTGTTGAATTTCAGTTTTGCTTGAAACTCTCTTTATTGGCTGCTCTGCCACCGAGCTATGGAAGTTTAGATGGCAGAGTAATATATATTGATGT
AGAATCTAAGTTTAGTTCCAGAAGGATGATTGAAATTGACATGAGAAGCTTTCCTGATGTATTGGAAATGAAGGACATAGCACAAGAGATGGCTGGTTTGTCTTGCCACC
TGCTTCACTTTCTGAATTCAATGAGAGGTTTGGTTCAAAGTCAAATAAATGTCATTTGGCCTAGACATCTCAATTGCAATGATTTACCTGCAATGGCATGGAATATTCAA
ATAGAACACAATTCAGGTGCTTGTTAG

mRNA sequence

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Protein sequence

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MRLFLVVEFQFCLKLSLLAALPPSYGSLDGRVIYIDVESKFSSRRMIEIDMRSFPDVLEMKDIAQEMAGLSCHLLHFLNSMRGLVQSQINVIWPRHLNCNDLPAMAWNIQ
IEHNSGAC

CmoCh02G008600 (gene) of Cucurbita moschata (Rifu) v1 genome