CuGenDBv2

Gene ID	CmoCh02G008630
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	NusB domain-containing protein
Genome location	Cmo_Chr02:5247730..5252800
RNA-Seq Expression	CmoCh02G008630
Synteny	CmoCh02G008630
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0031564 - transcription antitermination (biological process) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR006027 - NusB/RsmB/TIM44 IPR011605 - NusB antitermination factor IPR035926 - NusB-like superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605513.1 hypothetical protein SDJN03_02830, partial [Cucurbita argyrosperma subsp. sororia]

3.3e-159

90.33

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Query:  MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVS+VVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI                        
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF

Query:  LLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
              EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
Subjt:  LLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA

Query:  PRIINGCLRTFVKDIQETDSTHARVKEVVST
        PRIINGCLRTFVKDIQETDSTHARVKEVVST
Subjt:  PRIINGCLRTFVKDIQETDSTHARVKEVVST

XP_022948088.1 uncharacterized protein LOC111451776 [Cucurbita moschata]

1.8e-160

90.94

Show/hide

Query:  MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI                        
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF

Query:  LLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
              EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
Subjt:  LLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA

Query:  PRIINGCLRTFVKDIQETDSTHARVKEVVST
        PRIINGCLRTFVKDIQETDSTHARVKEVVST
Subjt:  PRIINGCLRTFVKDIQETDSTHARVKEVVST

XP_023007062.1 uncharacterized protein LOC111499665 [Cucurbita maxima]

6.9e-157

89.73

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Query:  MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVS+VVLPTRLDNVIATRPNFHFSS VSGIC FPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI                        
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF

Query:  LLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
              EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
Subjt:  LLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA

Query:  PRIINGCLRTFVKDIQETDSTHARVKEVVST
        PRIINGCLRTFVKDIQETDSTHARVKEVVST
Subjt:  PRIINGCLRTFVKDIQETDSTHARVKEVVST

XP_023532267.1 uncharacterized protein LOC111794466 [Cucurbita pepo subsp. pepo]

6.9e-157

89.43

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Query:  MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVS+VVLPTRLDNVIATRPNFHFSS VSGICRFPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI                        
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF

Query:  LLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
              EAE+LAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILEL ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
Subjt:  LLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA

Query:  PRIINGCLRTFVKDIQETDSTHARVKEVVST
        PRIINGCLRTFVKDIQETDSTHARVKEVVST
Subjt:  PRIINGCLRTFVKDIQETDSTHARVKEVVST

XP_038901769.1 uncharacterized protein LOC120088495 isoform X1 [Benincasa hispida]

5.2e-128

76.19

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Query:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS  +SGICRFPF  S+IVP+VK+S+ HLCPQASLRASTSF +N V ++ SS+ VSS+E IPK+DKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCFLLDCISEAEILAAP
        EGSDPVRLFEKRLN R E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDS I                              EAEILAAP
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCFLLDCISEAEILAAP

Query:  PKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD
        PK+VYSKLILRFTRKLLVAVVD WDS VLKI+KVIP TWKDKPA RILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD
Subjt:  PKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD

Query:  IQETDSTHARVKEVV
        I+E DS+HAR K+ V
Subjt:  IQETDSTHARVKEVV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWZ5 NusB domain-containing protein

7.5e-125

Show/hide

Query:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS  +SGIC+FPF  S+IVP++K+S+P  C QASLRASTSFS+N V +E SS+ +SSIE IPK+DKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCFLLDCISEAEILAAP
        EGSDPVRLFEKRLNAR E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS I                              EAEILAAP
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCFLLDCISEAEILAAP

Query:  PKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD
        PK+VYSKLILRFTRKLLVAV D WDS  LKI+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD
Subjt:  PKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD

Query:  IQETDSTHARVK
        I+E DS  AR K
Subjt:  IQETDSTHARVK

A0A1S3BNR2 uncharacterized protein LOC103491638 isoform X1

6.2e-127

75.87

Show/hide

Query:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS+ +SGIC+FPF  S+IVP+VK S+P LC QASLRASTSF +N V +E SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCFLLDCISEAEILAAP
        EGSDPVRLFEKRLN+R E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS I                              EAEILAAP
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCFLLDCISEAEILAAP

Query:  PKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD
        PK+VYSKLILRFTRKLLVAVVD WD+  LKI+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD
Subjt:  PKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD

Query:  IQETDSTHARVKEVV
        I+ETDST AR K+ V
Subjt:  IQETDSTHARVKEVV

A0A5D3DDJ4 NusB/RsmB/TIM44

6.2e-127

75.87

Show/hide

Query:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS+ +SGIC+FPF  S+IVP+VK S+P LC QASLRASTSF +N V +E SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCFLLDCISEAEILAAP
        EGSDPVRLFEKRLN+R E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS I                              EAEILAAP
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCFLLDCISEAEILAAP

Query:  PKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD
        PK+VYSKLILRFTRKLLVAVVD WD+  LKI+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD
Subjt:  PKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD

Query:  IQETDSTHARVKEVV
        I+ETDST AR K+ V
Subjt:  IQETDSTHARVKEVV

A0A6J1G8E0 uncharacterized protein LOC111451776

8.5e-161

90.94

Show/hide

Query:  MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI                        
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF

Query:  LLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
              EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
Subjt:  LLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA

Query:  PRIINGCLRTFVKDIQETDSTHARVKEVVST
        PRIINGCLRTFVKDIQETDSTHARVKEVVST
Subjt:  PRIINGCLRTFVKDIQETDSTHARVKEVVST

A0A6J1KXJ4 uncharacterized protein LOC111499665

3.3e-157

89.73

Show/hide

Query:  MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVS+VVLPTRLDNVIATRPNFHFSS VSGIC FPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI                        
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF

Query:  LLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
              EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
Subjt:  LLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA

Query:  PRIINGCLRTFVKDIQETDSTHARVKEVVST
        PRIINGCLRTFVKDIQETDSTHARVKEVVST
Subjt:  PRIINGCLRTFVKDIQETDSTHARVKEVVST

SwissProt top hits

e value

%identity

Alignment

A7GWZ7 Transcription antitermination protein NusB

2.0e-05

35.37

Show/hide

Query:  VAVVDRWDSHVLK---IDKVIPSTWKDKPAGR--ILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL
        +  ++ +D+  LK   +D+++    K+K   R  I+EL IL L + E+   GT   ++INEA++LAK     +AP+ ING L
Subjt:  VAVVDRWDSHVLK---IDKVIPSTWKDKPAGR--ILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL

B1WXY6 Transcription antitermination protein NusB

5.7e-05

38.67

Show/hide

Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQ
        +ID+ + +  KD    R+  ++  IL LA++EI  +    ++ INEAV+LAKR+ D    R ING LR F   I+
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQ

Q18B61 Transcription antitermination protein NusB

4.0e-06

39.19

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Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI
        KID++I    K+    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P+ ING L + V +I
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI

Q5N1J7 Transcription antitermination protein NusB

2.6e-05

42.65

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Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR
        +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR

Q8GIR7 Transcription antitermination protein NusB

2.6e-05

42.65

Show/hide

Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR
        +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR

Arabidopsis top hits

e value

%identity

Alignment

AT4G26370.1 antitermination NusB domain-containing protein

1.5e-85

60.58

Show/hide

Query:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV
        +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGSDP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  
Subjt:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV

Query:  ETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKP
        ET EE DEL+R DEK+S I                              EAE+L+APPK+VYSKL+LRF +KLL AVVD+WDSHV+ I+K+ P  WK  P
Subjt:  ETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKP

Query:  AGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHA-RVKEVVS
        AGRILE  ILHLAMSE+ V+ TRH IVINEAVDLAKRFCDG+APRIINGCLRTFVKD   T +  A  +K+ VS
Subjt:  AGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHA-RVKEVVS

AT4G26370.2 antitermination NusB domain-containing protein

1.5e-37

59.44

Show/hide

Query:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV
        +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGSDP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  
Subjt:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV

Query:  ETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF
        ET EE DEL+R DEK+S I  + +L      IS L     FCF
Subjt:  ETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCF

Sequences

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CDS sequence

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ATGGTGGAACTTGTATCAATCGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGCCTAATTTTCATTTCTCCTCCCCCGTTTCTGGAATATGCCGTTTCCC
ATTCCCCACTAGTGCAATTGTTCCCTATGTAAAAGAATCCGTGCCACACCTCTGTCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTGGGTAAAG
AGAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTCAATTATTTAT
GCATCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGAACCGGGATATGAATTTGACAAGACATCATTGATGGAATACAACCA
TATGAGCTTTGGTGGGCCGCCAGTTACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGTTGTAAATACAGTCTTGTCGA
ACCTCAAAAGTCCCATTTCATTGCTTTTAGTGATAGCTAAGTTCTGTTTCCTGCTTGACTGTATCTCAGAGGCAGAAATCCTTGCGGCCCCTCCAAAGGTTGTCTACAGC
AAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGATAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTGGAAGGACAAGCC
AGCAGGACGGATTCTGGAACTTTGTATTCTTCACCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGCCGTCGATCTTGCAAAAC
GATTCTGCGACGGAGCAGCACCTCGAATTATTAACGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAGGAAGTAGTCAGT
ACATGA

mRNA sequence

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TATCTTCACCCGACCGGCCTCCCCTTATCTTTTTCCCTCCAACTCTCTGTTTCATCTTCTCCACCTTCTTTCTAACCCCTCGTTCCCGGCTTAAACCCTCCACGTTCAGC
AGAGGTCAACCGGAATTTGATCAGCCATATGGTTTGAAATTCTCCTACGGCCAGCATGGTGGAACTTGTATCAATCGTGGTTTTGCCCACAAGACTGGATAATGTTATTG
CTACCAGGCCTAATTTTCATTTCTCCTCCCCCGTTTCTGGAATATGCCGTTTCCCATTCCCCACTAGTGCAATTGTTCCCTATGTAAAAGAATCCGTGCCACACCTCTGT
CCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTGGGTAAAGAGAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAG
TGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTCAATTATTTATGCATCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATG
CTCGTCTAGAACCGGGATATGAATTTGACAAGACATCATTGATGGAATACAACCATATGAGCTTTGGTGGGCCGCCAGTTACTGTGGAAACAGCTGAAGAAGCAGATGAG
CTTCTACGTAAGGATGAAAAGGATTCTGCAATCGTTGTAAATACAGTCTTGTCGAACCTCAAAAGTCCCATTTCATTGCTTTTAGTGATAGCTAAGTTCTGTTTCCTGCT
TGACTGTATCTCAGAGGCAGAAATCCTTGCGGCCCCTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGATAGATGGG
ACAGTCACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTGGAAGGACAAGCCAGCAGGACGGATTCTGGAACTTTGTATTCTTCACCTGGCTATGTCTGAAATAACG
GTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGCCGTCGATCTTGCAAAACGATTCTGCGACGGAGCAGCACCTCGAATTATTAACGGGTGCCTTAGGACCTTTGT
GAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAGGAAGTAGTCAGTACATGACTCTAAACTCTTGGGGTGGCTCAGGACCTTCGTAAGGATATCAAAAATT
TTGACTCAACTCGTGCTCTAGAGAAGCAAGAAGTGACTCTGAAAGTGGTGAGTCGTTAAGATGCTGTTGGCTGGATGGATAAGGAATTAGAGGGCACTTCCCTTCCATGG
AAATGGAGTACTACGGAGTTGTAGATGTGTAATTCTTCTAGGGAGATAGTTCCTACAAAAGACTTCGGTTAAGTGTATCAACTTTACCTCCTAAGTTTTAATTTTATCAA
ATGAAAATCTGGACTTAGAACATGTATTGTAATCTTTACCTCAGGGTTAAGGTCGACTCCCTGATAAGGAATTTGTTAGATTTTTGATGCAAAAAAGGAGCAATTAGCAA
CAGAAATCCACCCAGGCCCTCCAAAACAATGAAAAACTTAATTCCAAACAAACCCATAAATATTTGTCCTGCTTCCCTTTTATTCTTGATATTGATACATGGCTATTACA
CTGGAAGGATAGCCTTTCCCAACTTCATAGTTATCAAACAACTTAAGGTAGTTGCAATTATTACAGAGGACGTATAAAATAAACATTGTTATGTAGAGGAGACTGGCTGT
GTTAAGGAACAGTGATTCGGTCGCACACTAGCTAGCGCTGCTAACACGAACAACCAGAGGACTTGTGACCCTATGGAACCCATCTGACCATTCAATCTCCCCAAAATCAT
ACCTCCCACGAGCTTTCTTGAGTGGGGTTATGGTGATGTAGTAGGAAACGTGCTGCCTAAACCAAGAGAAAAGAAGAATCCTAGGCCATACCAATACTTGCACTCCATTG
GGAGGATTCAGCTTAAGAAAGTAGATGGCATTTTTGTTTGCTGCTACATTACGAACAGTCCTTTTGATTGTGGTTGTGGATTTGAGATTTGCAAGTGTAATGGAAGGATA
ATTGAGATTGGCAATGGAGGTGGATAGAAATGGTGGACAACAAACAAGTGTTTGTGAAGAAGGGTTCACAATCATCCTGATTTGCTGCTCTGTGTACCCAATATTGCAGA
GAAAAATAATGTAATCATTGGCTGTCATGTCGTACACTAGTCCTGGATTTACTGCCTTCAATGGGTTCACTTGGCCACCTCCAATGTCGAATGGATCGGATGGTTTCGTG
GATCCACCTGCTAGGATGGTGTTGCGAGTGGAGTCTCTCTTGGTGGCTGAATTATGAGCCACGAGTTAGTTAATAAACTGGTTGTTTGAAAGTTCAGAGACTAAAATGAA
AAGGACGGGAATGGTTAACCTGTGGTGATGAGGGCAGATCTAATGGCTGCAGGAGACCAGCTTGGATGCAGAGATTTGATGAGGGCAACGACTCCAGAGATGTGAGGGCA
TGACATTGAAGTCCCTGATTGGAAATTCCATTTGACTTGCCTTTGGCTTTCTCCTTCTGTCGCTGTTGGCCGCACTGTTGGAGCAGTTTCTGGAGGCCATGCCGCCAATA
TGTTCACTCCTGGGGCACTTATGTCTGGCTGCACCATACATAATACCCTCGTTAGTGTTGAAAATGACCATCATAC

Protein sequence

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MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIY
ASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCFLLDCISEAEILAAPPKVVYS
KLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
T

CmoCh02G008630 (gene) of Cucurbita moschata (Rifu) v1 genome