CuGenDBv2

Gene ID	CmoCh02G009610
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Mitochondrial import inner membrane translocase subunit
Genome location	Cmo_Chr02:5895463..5898934
RNA-Seq Expression	CmoCh02G009610
Synteny	CmoCh02G009610
Gene Ontology terms	GO:0045039 - protein insertion into mitochondrial inner membrane (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0042719 - mitochondrial intermembrane space protein transporter complex (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR004217 - Tim10-like IPR035427 - Tim10-like domain superfamily IPR039238 - Mitochondrial import inner membrane translocase subunit Tim8/13

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605617.1 Mitochondrial import inner membrane translocase subunit TIM13, partial [Cucurbita argyrosperma subsp. sororia]

3.7e-38

98.84

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Query:  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH
        MDSFSAP SDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH
Subjt:  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH

XP_004145880.1 mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus]

3.0e-35

95.4

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Query:  MDSFSAPSSDSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH
        MDSFS+PSS SS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS ALFKTPH
Subjt:  MDSFSAPSSDSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH

XP_022958202.1 mitochondrial import inner membrane translocase subunit Tim13-like [Cucurbita moschata]

9.9e-39

100

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Query:  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH
        MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH
Subjt:  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH

XP_022995653.1 mitochondrial import inner membrane translocase subunit Tim13-like [Cucurbita maxima]

7.1e-37

95.35

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Query:  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH
        MDSFS+PSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGS+LSGSESSCISRCMERYIEATS+VS ALFKTPH
Subjt:  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH

XP_038906948.1 mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida]

2.3e-35

95.4

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Query:  MDSFSAPSS-DSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH
        MDSFS+PSS  SSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS ALFKTPH
Subjt:  MDSFSAPSS-DSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KK66 Mitochondrial import inner membrane translocase subunit

1.4e-35

95.4

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Query:  MDSFSAPSSDSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH
        MDSFS+PSS SS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS ALFKTPH
Subjt:  MDSFSAPSSDSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH

A0A1S3AUN2 Mitochondrial import inner membrane translocase subunit

1.4e-35

95.4

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Query:  MDSFSAPSSDSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH
        MDSFS+PSS SS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS ALFKTPH
Subjt:  MDSFSAPSSDSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH

A0A6J1H177 Mitochondrial import inner membrane translocase subunit

4.8e-39

100

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Query:  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH
        MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH
Subjt:  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH

A0A6J1I4K9 Mitochondrial import inner membrane translocase subunit

1.2e-34

93.1

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Query:  MDSFSAPSS-DSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH
        MDSFS+PSS  SSQFS NEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEAT IVS ALFKTPH
Subjt:  MDSFSAPSS-DSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH

A0A6J1K8L7 Mitochondrial import inner membrane translocase subunit

3.4e-37

95.35

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Query:  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH
        MDSFS+PSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGS+LSGSESSCISRCMERYIEATS+VS ALFKTPH
Subjt:  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH

SwissProt top hits

e value

%identity

Alignment

Q6DGJ3 Mitochondrial import inner membrane translocase subunit Tim13

5.3e-11

46.75

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Query:  FSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGA
        FS+ SS S +       +Q+K Q+A A A+E L+ +  KCF KCI KPGS+L  SE  CI+ CM+RY++A + VS A
Subjt:  FSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGA

Q6GPY0 Mitochondrial import inner membrane translocase subunit Tim13-A

5.3e-11

44.16

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Query:  FSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGA
        FS   S + +       +Q+K Q+A A A+E L+ +  KCF KCI KPG SL  SE  CI+ CM+RY++A + VS A
Subjt:  FSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGA

Q8AVK1 Mitochondrial import inner membrane translocase subunit Tim13-B

8.2e-12

45.45

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Query:  FSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGA
        FS   S S +       +Q+K Q+A A A+E L+ +  KCF KCI KPG SL  SE  C++ CM+RY++A +IVS A
Subjt:  FSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGA

Q9XGY5 Mitochondrial import inner membrane translocase subunit Tim13

6.0e-23

69.05

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Query:  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKT
        MDSFS  SS  S  +     DQ+K QLAQAYA+EFLET+  KCF KC+TKPGSSLSGSESSCISRC++RYIEAT IVS ALF +
Subjt:  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKT

Q9XH48 Mitochondrial import inner membrane translocase subunit TIM13

1.6e-23

65.48

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Query:  MDSFSAP--SSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALF
        MDS+S+P      S  S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GSESSCISRC+ERY+EAT+I+S +LF
Subjt:  MDSFSAP--SSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALF

Arabidopsis top hits

e value

%identity

Alignment

AT1G61570.1 translocase of the inner mitochondrial membrane 13

1.1e-24

65.48

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Query:  MDSFSAP--SSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALF
        MDS+S+P      S  S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GSESSCISRC+ERY+EAT+I+S +LF
Subjt:  MDSFSAP--SSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALF

AT5G50810.1 translocase inner membrane subunit 8

5.3e-06

36.23

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Query:  DSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITK-PGSSLSGSESSCISRCMERYIEATSIV
        D S  +  E    L  +  +A   E +  +   C+DKCIT  PGS  S SESSC++ C +RY++ + I+
Subjt:  DSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITK-PGSSLSGSESSCISRCMERYIEATSIV

Sequences

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CDS sequence

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ATGGATTCATTTTCGGCACCATCAAGCGATTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTAGCCCAGGCCTACGCAGAGGAGTTTCTTGA
GACCTTAAGAGTAAAGTGTTTTGACAAGTGTATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGTGAAAGCAGTTGCATCTCCAGGTGCATGGAGCGCTATATTGAGGCTA
CTAGCATCGTCAGTGGAGCCCTGTTTAAGACACCACACTGA

mRNA sequence

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CTAATTGTGTCGCCGTCGCCTCCCTCGAAAACAAAATCAGCTCTGGGGCGCAACCAAACTACAAATAGGCAGTGGTTTATAGGGTTTTGCAACTACCGAACACCGAACAA
ATGGATTCATTTTCGGCACCATCAAGCGATTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTAGCCCAGGCCTACGCAGAGGAGTTTCTTGA
GACCTTAAGAGTAAAGTGTTTTGACAAGTGTATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGTGAAAGCAGTTGCATCTCCAGGTGCATGGAGCGCTATATTGAGGCTA
CTAGCATCGTCAGTGGAGCCCTGTTTAAGACACCACACTGAAGGAAAGGTTTTGCCTGAGAGATTACGAGTTTGAGGTATCTTTAGCAACCTACAATTTTTCTGAGATTC
CCCATTTGATATTTGTTTTCCAGATCTTGAATCTTTCGCAAGGAGAAGTACTTTTGATTTGAGACCCCATAGATAATATTGGTATCATTTACCTGTTTACAAACATGTCA
ACTTTGGGTCAATTAATCTCTCATTCCTTCTCAGTTAACTTCTCTACCAAGCTGATATGATTCTATTGGTCGGATAAAGTAAATAGATGAGTGGC

Protein sequence

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MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH

CmoCh02G009610 (gene) of Cucurbita moschata (Rifu) v1 genome