CuGenDBv2

Gene ID	CmoCh02G010000
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	origin of replication complex subunit 3 isoform X2
Genome location	Cmo_Chr02:6124078..6124902
RNA-Seq Expression	CmoCh02G010000
Synteny	CmoCh02G010000
Gene Ontology terms	GO:0006270 - DNA replication initiation (biological process) GO:0009744 - response to sucrose (biological process) GO:0048527 - lateral root development (biological process) GO:0005656 - nuclear pre-replicative complex (cellular component) GO:0005664 - nuclear origin of replication recognition complex (cellular component) GO:0031261 - DNA replication preinitiation complex (cellular component) GO:0003688 - DNA replication origin binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022957914.1 origin of replication complex subunit 3 isoform X1 [Cucurbita moschata]

1.8e-57

100

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Query:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
        DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
Subjt:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS

Query:  SCELQYQFSSRKDG
        SCELQYQFSSRKDG
Subjt:  SCELQYQFSSRKDG

XP_022957916.1 origin of replication complex subunit 3 isoform X2 [Cucurbita moschata]

1.8e-57

100

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Query:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
        DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
Subjt:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS

Query:  SCELQYQFSSRKDG
        SCELQYQFSSRKDG
Subjt:  SCELQYQFSSRKDG

XP_023534343.1 origin of replication complex subunit 3 isoform X1 [Cucurbita pepo subsp. pepo]

1.8e-57

100

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Query:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
        DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
Subjt:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS

Query:  SCELQYQFSSRKDG
        SCELQYQFSSRKDG
Subjt:  SCELQYQFSSRKDG

XP_023534344.1 origin of replication complex subunit 3 isoform X2 [Cucurbita pepo subsp. pepo]

1.8e-57

100

Show/hide

Query:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
        DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
Subjt:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS

Query:  SCELQYQFSSRKDG
        SCELQYQFSSRKDG
Subjt:  SCELQYQFSSRKDG

XP_023534346.1 origin of replication complex subunit 3 isoform X3 [Cucurbita pepo subsp. pepo]

1.8e-57

100

Show/hide

Query:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
        DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
Subjt:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS

Query:  SCELQYQFSSRKDG
        SCELQYQFSSRKDG
Subjt:  SCELQYQFSSRKDG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1H0J7 origin of replication complex subunit 3 isoform X2

8.7e-58

100

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Query:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
        DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
Subjt:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS

Query:  SCELQYQFSSRKDG
        SCELQYQFSSRKDG
Subjt:  SCELQYQFSSRKDG

A0A6J1H1M8 origin of replication complex subunit 3 isoform X3

8.7e-58

100

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Query:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
        DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
Subjt:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS

Query:  SCELQYQFSSRKDG
        SCELQYQFSSRKDG
Subjt:  SCELQYQFSSRKDG

A0A6J1H3F7 origin of replication complex subunit 3 isoform X1

8.7e-58

100

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Query:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
        DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
Subjt:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS

Query:  SCELQYQFSSRKDG
        SCELQYQFSSRKDG
Subjt:  SCELQYQFSSRKDG

A0A6J1H3G2 origin of replication complex subunit 3 isoform X4

8.7e-58

100

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Query:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
        DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
Subjt:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS

Query:  SCELQYQFSSRKDG
        SCELQYQFSSRKDG
Subjt:  SCELQYQFSSRKDG

A0A6J1K0R6 origin of replication complex subunit 3 isoform X2

5.6e-57

98.25

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Query:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS
        DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNN+GNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKG+SFSS
Subjt:  DGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQGKGMSFSS

Query:  SCELQYQFSSRKDG
        SCELQYQFSSRKDG
Subjt:  SCELQYQFSSRKDG

SwissProt top hits

e value

%identity

Alignment

Q0IY07 Origin of replication complex subunit 3

1.3e-10

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Query:  LSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQL
        L K+AS   S +R      +G+N+ + LSEL   QK WS+V+ CLY+ GK+GKVQLLD+ CEA++P L
Subjt:  LSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQL

Q6E7H0 Origin of replication complex subunit 3

5.0e-10

34.43

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Query:  HSLHRPIFCMLLKVASDG-------NRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQ
        H    P+  ML     DG          L  E   KHA D  S +R  +   T   L + L +L+R    WS VV CLY+ GK+ K++LLD+ CE LDP+
Subjt:  HSLHRPIFCMLLKVASDG-------NRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQ

Query:  -----LFKPITSENSSRLQQGK
              F P    NS     G+
Subjt:  -----LFKPITSENSSRLQQGK

Arabidopsis top hits

e value

%identity

Alignment

AT5G16690.1 origin recognition complex subunit 3

3.5e-11

34.43

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Query:  HSLHRPIFCMLLKVASDG-------NRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQ
        H    P+  ML     DG          L  E   KHA D  S +R  +   T   L + L +L+R    WS VV CLY+ GK+ K++LLD+ CE LDP+
Subjt:  HSLHRPIFCMLLKVASDG-------NRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQ

Query:  -----LFKPITSENSSRLQQGK
              F P    NS     G+
Subjt:  -----LFKPITSENSSRLQQGK

Sequences

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CDS sequence

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ATGCACTCCCTCCATAGACCTATTTTTTGCATGCTACTTAAAGTAGCATCAGATGGGAACCGTGCTCTTTTCCTAGAAGTTCTATCCAAGCACGCTTCAGATTTCCTGTC
TGATTCAAGGTACCCATTGGTGGAAGGAACTGGTAATAATCTTGGTAATGTATTATCAGAATTAGAGAGATGGCAGAAGGGCTGGAGTGCTGTTGTCCAGTGTCTTTATC
AAGTTGGGAAGTATGGCAAAGTTCAATTGCTTGACTTACTTTGTGAGGCACTCGATCCACAACTTTTCAAACCAATAACTTCTGAAAATTCAAGTAGATTGCAGCAAGGA
AAGGGGATGTCGTTTTCAAGTAGTTGTGAGCTACAATATCAATTCTCATCTCGCAAGGATGGGGATTACATAACTACAGACTTAAGCTTTAACATTGCCATGTACTTTTC
CCCAAAAATTTTTTATTCCTCTTCTAAAAGATATAAACAGGACTTGCATTAA

mRNA sequence

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Protein sequence

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MHSLHRPIFCMLLKVASDGNRALFLEVLSKHASDFLSDSRYPLVEGTGNNLGNVLSELERWQKGWSAVVQCLYQVGKYGKVQLLDLLCEALDPQLFKPITSENSSRLQQG
KGMSFSSSCELQYQFSSRKDGDYITTDLSFNIAMYFSPKIFYSSSKRYKQDLH

CmoCh02G010000 (gene) of Cucurbita moschata (Rifu) v1 genome