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CmoCh02G010030 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G010030
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSWR1 complex subunit 2
Genome locationCmo_Chr02:6135498..6138576
RNA-Seq ExpressionCmoCh02G010030
SyntenyCmoCh02G010030
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0043486 - histone exchange (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR008895 - Vps72/YL1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605652.1 SWR1 complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia]5.6e-87100Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS
        MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS

Query:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDEPGRHAS
        SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDEPGRHAS
Subjt:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDEPGRHAS

KAG7035562.1 SWR1 complex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]2.5e-7185.2Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSED-----------------------------
        MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSED                             
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSED-----------------------------

Query:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNE
        DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNE
Subjt:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNE

XP_022970136.1 SWR1 complex subunit 2 [Cucurbita maxima]1.1e-5876.24Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS
        MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED+SEPEEEAENEADERTQTKKRL+ PGKT 
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS

Query:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE
        SK+ NKKR VSKIE+SSKDEASTD STPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE

XP_038907261.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida]6.8e-6177.35Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS
        MDSSKE  APVFL+RSSR TRGKRMTKLLDEE+EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED+SEPEEEAENEADERTQTKKRL+ PGKTS
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS

Query:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE
        SK+ NKKR VSK+E+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE

XP_038907266.1 SWR1 complex subunit 2 isoform X2 [Benincasa hispida]6.8e-6177.35Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS
        MDSSKE  APVFL+RSSR TRGKRMTKLLDEE+EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED+SEPEEEAENEADERTQTKKRL+ PGKTS
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS

Query:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE
        SK+ NKKR VSK+E+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE

TrEMBL top hitse value%identityAlignment
A0A1S3CUJ8 SWR1 complex subunit 21.0e-5776.24Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS
        MDSSKE   PVFL+RSSR TRGKRMTKLLDEE EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED+SEPEEEAENEA+ERTQ KKRL+ PGKT 
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS

Query:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE
        SK+ NKKRAVSKIE+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE

A0A5A7UJC3 SWR1 complex subunit 25.8e-5876.24Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS
        MDSSKE   PVFL+RSSR TRGKRMTKLLDEE EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED+SEPEEEAENEA+ERTQ KKRL+ PGKT 
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS

Query:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE
        SK+ NKKRAVSKIE+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE

A0A6J1DZB8 SWR1 complex subunit 21.2e-5875.69Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS
        M+++KE  APVFL+RSSR TRGKRMT+LLDEE+EEDELFWNQ+ALKEEE DDEYEE+PEI DE DSDF+ED+SEPEEEAENEAD+RTQTKKRL+ PGKTS
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS

Query:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE
        SK  NKKRAVSKIE  SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE

A0A6J1EM84 SWR1 complex subunit 25.3e-5976.24Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS
        MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED+SEPEEEAENEADERTQTKKRL+ PGKT 
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS

Query:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE
        SK+ NKKR VSKIE+SSKDEASTD STPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE

A0A6J1HZS7 SWR1 complex subunit 25.3e-5976.24Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS
        MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED+SEPEEEAENEADERTQTKKRL+ PGKT 
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTS

Query:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE
        SK+ NKKR VSKIE+SSKDEASTD STPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE

SwissProt top hitse value%identityAlignment
F4IP06 SWR1 complex subunit 21.4e-2749.72Show/hide
Query:  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKK-RA
        VFL+R++R+TRGKRMTKLLD+E+EEDE FWNQ+ALKEEE DDEYE + E+ DE DSDF++D+ EP+  A NE + R   KKRL+ PGKT+SK   KK + 
Subjt:  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKK-RA

Query:  VSKIE-----ESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE
        VS++E     E   +E         E ++  +D E E+  +KSTRTS VVR+AERD +R+  +A  +   R+   +E
Subjt:  VSKIE-----ESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE

Arabidopsis top hitse value%identityAlignment
AT2G36740.1 sequence-specific DNA binding transcription factors;DNA binding;DNA binding9.6e-2949.72Show/hide
Query:  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKK-RA
        VFL+R++R+TRGKRMTKLLD+E+EEDE FWNQ+ALKEEE DDEYE + E+ DE DSDF++D+ EP+  A NE + R   KKRL+ PGKT+SK   KK + 
Subjt:  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKK-RA

Query:  VSKIE-----ESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE
        VS++E     E   +E         E ++  +D E E+  +KSTRTS VVR+AERD +R+  +A  +   R+   +E
Subjt:  VSKIE-----ESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCATCGAAAGAAAGAGTTGCTCCCGTTTTTCTTGAGCGTTCTTCTCGGTCGACTAGAGGAAAGAGGATGACTAAATTGCTTGATGAGGAAATTGAAGAAGACGA
GTTGTTTTGGAATCAGGATGCTCTTAAAGAGGAGGAGGTTGATGATGAATACGAGGAAGATCCTGAGATTGTGGATGAACATGATAGTGATTTCAGTGAAGATGACTCTG
AACCAGAGGAAGAAGCTGAGAATGAAGCAGATGAGAGAACACAAACAAAGAAGCGATTAGTATCTCCCGGAAAGACTTCTTCCAAGGACAATAATAAAAAGAGAGCTGTT
TCCAAAATTGAGGAATCATCCAAAGATGAAGCATCAACCGATCACTCTACGCCTCCTGAACATCACGATACACCAGACGATACTGAAGTTGAGAGAACAGAGAAGAAGTC
CACTAGAACTTCAGCTGTTGTTAGAGAAGCTGAGAGGGATGTTATTCGTAGCCACAATGAAGCCAATCACGAGGAAAAGTCCAGGCGAGGAGAAGATGACGAGCCAGGAA
GACATGCTTCTTGA
mRNA sequenceShow/hide mRNA sequence
AAACAGGGTTGAGGTGGCGGGCTCTGGAATTCGATCGAGTAGATTTTCCCGCGCTCCATCGTTAGATAACCCCAGATCGATTTAGCGTACTGTCCAGTTCCAGTAACCAG
AAAATCATCGTAATCCGCTACCACTTTTCGGCCATCGGTAGCCGCCAGTGATTTCCACAAGTCTTGAACTTCAATTTCCAGTATTCGTAAGTGGATTTTGTTTCCCAGCC
ATGGATTCATCGAAAGAAAGAGTTGCTCCCGTTTTTCTTGAGCGTTCTTCTCGGTCGACTAGAGGAAAGAGGATGACTAAATTGCTTGATGAGGAAATTGAAGAAGACGA
GTTGTTTTGGAATCAGGATGCTCTTAAAGAGGAGGAGGTTGATGATGAATACGAGGAAGATCCTGAGATTGTGGATGAACATGATAGTGATTTCAGTGAAGATGACTCTG
AACCAGAGGAAGAAGCTGAGAATGAAGCAGATGAGAGAACACAAACAAAGAAGCGATTAGTATCTCCCGGAAAGACTTCTTCCAAGGACAATAATAAAAAGAGAGCTGTT
TCCAAAATTGAGGAATCATCCAAAGATGAAGCATCAACCGATCACTCTACGCCTCCTGAACATCACGATACACCAGACGATACTGAAGTTGAGAGAACAGAGAAGAAGTC
CACTAGAACTTCAGCTGTTGTTAGAGAAGCTGAGAGGGATGTTATTCGTAGCCACAATGAAGCCAATCACGAGGAAAAGTCCAGGCGAGGAGAAGATGACGAGCCAGGAA
GACATGCTTCTTGAAGCTGCTCACACAGGTGAAACTGATGGTTAATGTATGTTATTGTAGGTTGCAACACTGGGTGGATACTTTTAAGGGATCTTTTCATATTTGTCTTG
TATTAATATTTCAGACTTCCATATCTAAGAAATCATGAACCTGAGAAATTTGGAGCGTGTTTTTGCATGAGAAGTAAAAAAAAAAAAAAAGAGAGAGCAATTGTGCATAA
AGCTGTGTACAATGGGATGATAACTTGTCCGTGTTTGGAATTATGTTATATTGGTGTATTTTGTAGCAGGTTGCTCGTATCTATTTCAGGCAGAGCCTTCTTATTGGTAC
Protein sequenceShow/hide protein sequence
MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDDSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAV
SKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEANHEEKSRRGEDDEPGRHAS