; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh02G010120 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G010120
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionlate embryogenesis abundant protein At5g17165-like
Genome locationCmo_Chr02:6177217..6179309
RNA-Seq ExpressionCmoCh02G010120
SyntenyCmoCh02G010120
Gene Ontology termsNA
InterPro domainsIPR039291 - Late embryogenesis abundant protein At5g17165-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605657.1 ATP-dependent DNA helicase SRS2-like protein, partial [Cucurbita argyrosperma subsp. sororia]3.6e-5796.43Show/hide
Query:  MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL
        MAAASNLIIAARPRLAH RNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHM+HSLSEDYWAPHPQTGVFGPP TQHNPVPSDTS GGAKEGSVL
Subjt:  MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL

Query:  ELKVWFRHVELE
        ELKVWFRHVELE
Subjt:  ELKVWFRHVELE

XP_022957877.1 late embryogenesis abundant protein At5g17165-like [Cucurbita moschata]2.3e-59100Show/hide
Query:  MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL
        MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL
Subjt:  MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL

Query:  ELKVWFRHVELEV
        ELKVWFRHVELEV
Subjt:  ELKVWFRHVELEV

XP_022995249.1 late embryogenesis abundant protein At5g17165-like [Cucurbita maxima]9.5e-5896.43Show/hide
Query:  MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL
        MAAASNLIIAARPRLAHLRNP+RRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHS+SEDYWAPHPQTGVFGPPI+QHNPVPSDTSAGGAKEGSVL
Subjt:  MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL

Query:  ELKVWFRHVELE
        ELKVWFRH+ELE
Subjt:  ELKVWFRHVELE

XP_023532525.1 late embryogenesis abundant protein At5g17165-like [Cucurbita pepo subsp. pepo]1.1e-5899.11Show/hide
Query:  MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL
        MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHS+SEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL
Subjt:  MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL

Query:  ELKVWFRHVELE
        ELKVWFRHVELE
Subjt:  ELKVWFRHVELE

XP_038875585.1 late embryogenesis abundant protein At5g17165-like [Benincasa hispida]1.1e-2660.5Show/hide
Query:  AASNLIIAARPRLAHLRNPLRRLSPS------LFTLRAGHWSAYEKNPEEEVCPTVVPDHMIH-SLSEDYWAPHPQTGVFGPPITQH--NPVPSDTSAGG
        A+S  II A PR   L +P   LS S       F LRA HWSAYEKNPEE++ PTVVPDH+IH ++SE+YWAPHP+TGVFGPPI     + VP+DTSAGG
Subjt:  AASNLIIAARPRLAHLRNPLRRLSPS------LFTLRAGHWSAYEKNPEEEVCPTVVPDHMIH-SLSEDYWAPHPQTGVFGPPITQH--NPVPSDTSAGG

Query:  AKEGSVLELKVWFRHVELE
         KE SVL++K WFRH  LE
Subjt:  AKEGSVLELKVWFRHVELE

TrEMBL top hitse value%identityAlignment
A0A0A0KRJ5 Uncharacterized protein1.1e-2455.93Show/hide
Query:  MAAASNLII---AARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMI-HSLSEDYWAPHPQTGVFGPPITQHN--PVPSDTSAGGA
        MA +S +I+   AA PRL+ L           F  R+ HWSAYEKN E+++ PT+VP+H+I   LSEDYW PHP+TGVFGPP   HN   VP+DTSAGG 
Subjt:  MAAASNLII---AARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMI-HSLSEDYWAPHPQTGVFGPPITQHN--PVPSDTSAGGA

Query:  KEGSVLELKVWFRHVELE
         EGSVL LK WFRH  LE
Subjt:  KEGSVLELKVWFRHVELE

A0A1S4E6U6 uncharacterized protein LOC1035046948.2e-2357.94Show/hide
Query:  AARPRLAHLRNPLRRLSPSLFT-LRAGHWSAYEKNPEEEVCPTVVPDHMI-HSLSEDYWAPHPQTGVFGPPITQHN--PVPSDTSAGGAKEGSVLELKVW
        AA PRL+ L +    L P   +  RA HWSAYEKN E+ + PT+VP+ +I H+LS++YW PHPQTGVFGPP   HN   +P+DTSAGG  EGSVL LK W
Subjt:  AARPRLAHLRNPLRRLSPSLFT-LRAGHWSAYEKNPEEEVCPTVVPDHMI-HSLSEDYWAPHPQTGVFGPPITQHN--PVPSDTSAGGAKEGSVLELKVW

Query:  FRHVELE
        FRH  LE
Subjt:  FRHVELE

A0A5A7UIY1 Uncharacterized protein2.8e-2352.89Show/hide
Query:  MAAASNLII-----AARPRLAHLRNPLRRLSPSLFT-LRAGHWSAYEKNPEEEVCPTVVPDHMI-HSLSEDYWAPHPQTGVFGPPITQH--NPVPSDTSA
        MA +S +I+     AA PRL+ L +    L P   +  RA HWSAYEKN E+ + PT+VP+ +I H+LS++YW PHPQTGVFGPP   H  + +P+DTSA
Subjt:  MAAASNLII-----AARPRLAHLRNPLRRLSPSLFT-LRAGHWSAYEKNPEEEVCPTVVPDHMI-HSLSEDYWAPHPQTGVFGPPITQH--NPVPSDTSA

Query:  GGAKEGSVLELKVWFRHVELE
        GG + GSVL LK WFRH  LE
Subjt:  GGAKEGSVLELKVWFRHVELE

A0A6J1H0D3 late embryogenesis abundant protein At5g17165-like1.1e-59100Show/hide
Query:  MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL
        MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL
Subjt:  MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL

Query:  ELKVWFRHVELEV
        ELKVWFRHVELEV
Subjt:  ELKVWFRHVELEV

A0A6J1K564 late embryogenesis abundant protein At5g17165-like4.6e-5896.43Show/hide
Query:  MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL
        MAAASNLIIAARPRLAHLRNP+RRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHS+SEDYWAPHPQTGVFGPPI+QHNPVPSDTSAGGAKEGSVL
Subjt:  MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVL

Query:  ELKVWFRHVELE
        ELKVWFRH+ELE
Subjt:  ELKVWFRHVELE

SwissProt top hitse value%identityAlignment
F4KFM8 Late embryogenesis abundant protein At5g171653.8e-1745.95Show/hide
Query:  AAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVLE
        A + N+ +  R  +  +R+  R ++  LFT R  H SAY+KN EEE+ P+ VPD MI   S+ YW+PHPQTGVFGP  +  N    D   GG +E SV+E
Subjt:  AAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVLE

Query:  LKVWFRHVELE
         K WFR   LE
Subjt:  LKVWFRHVELE

Arabidopsis top hitse value%identityAlignment
AT3G03150.1 unknown protein3.5e-1843.93Show/hide
Query:  LIIAARPRLAHLRNPLRRLSPSLF-TLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVLELKVW
        LI + R  L + R   R  + +LF + R+GH SAY+KN E+E+  + VPD +I   S+ YW+PHP+TGVFGP  T+H    S T+ G  ++ +VLE   W
Subjt:  LIIAARPRLAHLRNPLRRLSPSLF-TLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVLELKVW

Query:  FRHVELE
        FR   LE
Subjt:  FRHVELE

AT5G17165.1 unknown protein2.7e-1845.95Show/hide
Query:  AAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVLE
        A + N+ +  R  +  +R+  R ++  LFT R  H SAY+KN EEE+ P+ VPD MI   S+ YW+PHPQTGVFGP  +  N    D   GG +E SV+E
Subjt:  AAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVLE

Query:  LKVWFRHVELE
         K WFR   LE
Subjt:  LKVWFRHVELE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGCTTCTAACCTTATAATCGCTGCTCGACCACGACTCGCCCATTTGCGGAACCCACTCCGCCGCCTCTCGCCCTCTCTCTTCACCCTCCGGGCAGGTCATTG
GTCAGCGTATGAGAAGAACCCAGAGGAGGAAGTCTGCCCGACAGTGGTGCCAGATCATATGATCCACTCCTTATCCGAAGACTACTGGGCGCCACATCCCCAAACCGGAG
TTTTCGGCCCACCAATAACTCAACACAATCCTGTTCCTAGCGACACGTCGGCTGGCGGCGCCAAAGAGGGCTCCGTTCTGGAGCTGAAGGTTTGGTTCCGACACGTCGAG
CTGGAGGTGTAA
mRNA sequenceShow/hide mRNA sequence
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATTGCATGGCCGCCGCTTCTAACCTTATAATCGCTGCTCGACCACGACTCGCCCATTTGCGGAACCCACTCCGCC
GCCTCTCGCCCTCTCTCTTCACCCTCCGGGCAGGTCATTGGTCAGCGTATGAGAAGAACCCAGAGGAGGAAGTCTGCCCGACAGTGGTGCCAGATCATATGATCCACTCC
TTATCCGAAGACTACTGGGCGCCACATCCCCAAACCGGAGTTTTCGGCCCACCAATAACTCAACACAATCCTGTTCCTAGCGACACGTCGGCTGGCGGCGCCAAAGAGGG
CTCCGTTCTGGAGCTGAAGGTTTGGTTCCGACACGTCGAGCTGGAGGTGTAATCTCCACGGCTATGATAAGATATAATAGTATAATAATAATAATAAGCTTACGTGCATG
CAGGGCTGTAAGAAGAAGTTTGTGTGTATTATTTGGATTGAGTGGTGTGTTTGTATTTCCAAGCTTCTATTATGAACGTGTGTGCTACACCAACTTTGCTGCTCATTTCA
TTATTATAATCTCTTGTTGTAAATTTAAGCGTTGTGATTAGAAAGGGAGTAACTACTGGGACGGGATTGGTGGTCGATGACATGCTCCATCCCCTGAGGCTTATGGAGCT
CTCAAATAGCCTCCCCTTAACCGATGTCCACATTTCTCGTTCTTTGTTCGACATTGAAGGATTTTATCAACATGGCTAACTTTAGGGCATGACTCTGATACTATGTTAGG
AGTCACGACTCTCCACAATGATATGATATTGTCCACTTTGAGCATGAGCTCTCATGACTTTGCTCTGGACTTCCCCAAAATGCCTGTACCAAAAGATGTATTCCTTTACT
TGTAAACCTATCATCGTTCCCTAAATAAGTAAATGTGACTCACTCCCTACAATTCTCAACAACTGTGACTCATAAAATTTGAAAAGTAAATTTGTTTTTATAAAA
Protein sequenceShow/hide protein sequence
MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHSLSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGAKEGSVLELKVWFRHVE
LEV