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CmoCh02G010230 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G010230
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionX-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like
Genome locationCmo_Chr02:6221218..6221631
RNA-Seq ExpressionCmoCh02G010230
SyntenyCmoCh02G010230
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3970875.1 hypothetical protein CMV_005466 [Castanea mollissima]2.1e-1140Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNF----MLQKNAIVDVCAVTETLNEPDFSDSVEGSGD
        M DS+LEL  +AAS++LFIFC  NLII I+L  S+   SSS+     ++PL++VI++ TN +Q      +  +N ++         +E    D  E    
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNF----MLQKNAIVDVCAVTETLNEPDFSDSVEGSGD

Query:  DHEDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV
         H   E+ +D+++ +RRVEEFIEKVN  W+ E  R+SRLV
Subjt:  DHEDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV

KAF5480290.1 hypothetical protein F2P56_001052, partial [Juglans regia]1.6e-1140.14Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTETLNEPDFS--------DSVE
        M DS+LEL + AAS++LFIFC  NLII+ V+       SS +    D++P+S++I+++T+ +Q    +   + D   ++   NE  +S        D  E
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTETLNEPDFS--------DSVE

Query:  GSGDDHE--DVE-DVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV
            DH+  DV+ D ED ++ +RRVEEFIEKVN GW+EE   +SRLV
Subjt:  GSGDDHE--DVE-DVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV

KAG6605668.1 hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sororia]1.6e-5991.49Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTETLNEPDFSDSVEGSGDDH--
        MADSILELAAEAASSTLFIFCIFNLI+LI+LFTSRPV SSSDHQNHDDVPLSIVIHSNTNA+QNFMLQKNAIVDVCAVTETLNEPDFSDSVEGSGDDH  
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTETLNEPDFSDSVEGSGDDH--

Query:  --EDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLVE
          ED ++VEDEEDFKRRVEEFIEKVN+GWREERQRTSRLVE
Subjt:  --EDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLVE

XP_030950213.1 uncharacterized protein LOC115974139 [Quercus lobata]1.6e-1141.84Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTET-----LNEPDFSDSVEGSG
        M DS+LEL  +AAS++LFIFC  NLII I+L  S+   SSS+     ++PLS+VI+++TN +Q     K    D   +T         E    D  E   
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTET-----LNEPDFSDSVEGSG

Query:  DDHEDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV
          H   E+ +D+++ +RRVEEFIEKVN  W+ E  R+SRLV
Subjt:  DDHEDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV

XP_031742158.1 probable ATP-dependent RNA helicase ddx52 [Cucumis sativus]1.9e-3164.79Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHD-DVPLSIVIHSNTN-AEQNFMLQKNAIVDVCAVTETLNEPD------FSDSVE
        MADSILELAA+A SSTLFIFC FNLIIL++ FTSRP  SS D QN D D+PLSIVIHS TN  EQN MLQK+ IV VC V E+ NE +       +  VE
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHD-DVPLSIVIHSNTN-AEQNFMLQKNAIVDVCAVTETLNEPD------FSDSVE

Query:  GSGDDHED--VEDVEDEEDFKRRVEEFIEKVNNGWREERQRT
         S DD+ED   ++ EDE+DF++RVEEFIEKVN GWREER RT
Subjt:  GSGDDHED--VEDVEDEEDFKRRVEEFIEKVNNGWREERQRT

TrEMBL top hitse value%identityAlignment
A0A2I4E8V2 uncharacterized protein LOC1089873751.1e-1039.57Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTETLNEPDFS--------DSVE
        M DS+LEL + AAS++LFIFC  NLII+ V+       SS +    D++P+S++I+++T+ +Q    +   + D   ++   NE  +S        D  E
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTETLNEPDFS--------DSVE

Query:  GSGDDHE--DVE-DVEDEEDFKRRVEEFIEKVNNGWREE
            DH+  DV+ D ED ++ +RRVEEFIEKVN GW+EE
Subjt:  GSGDDHE--DVE-DVEDEEDFKRRVEEFIEKVNNGWREE

A0A2N9GM45 Uncharacterized protein5.5e-1341.13Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTETLNEPDFSDSV-----EGSG
        M DS+LEL  +AAS++LFIFC  NLII I+L  S+   SSSD     ++PLS+VI+++TN     +     +     +    +E  +S        E SG
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTETLNEPDFSDSV-----EGSG

Query:  DDHEDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV
        +++   ++ ED+++ +RRVEEFIEKVN GW+ E  R+SRLV
Subjt:  DDHEDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV

A0A445GL19 Uncharacterized protein2.0e-1039.04Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTETLNEPDF----SDSVEGSGD
        M DS+L+   +AASS+ FIFC  NLII+I+L   +P  S S HQ   ++PLS   +    A+ +  L +     +    E  ++ +     S  +EG+ D
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTETLNEPDF----SDSVEGSGD

Query:  ------DHEDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV
              D +D  ++ DE++ KRRVEEFIEKVN GW+EE   TS LV
Subjt:  ------DHEDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV

A0A7N2QYC4 Uncharacterized protein7.9e-1241.84Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTET-----LNEPDFSDSVEGSG
        M DS+LEL  +AAS++LFIFC  NLII I+L  S+   SSS+     ++PLS+VI+++TN +Q     K    D   +T         E    D  E   
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTET-----LNEPDFSDSVEGSG

Query:  DDHEDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV
          H   E+ +D+++ +RRVEEFIEKVN  W+ E  R+SRLV
Subjt:  DDHEDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV

K7MIR2 Uncharacterized protein2.0e-1039.04Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTETLNEPDF----SDSVEGSGD
        M DS+L+   +AASS+ FIFC  NLII+I+L   +P  S S HQ   ++PLS   +    A+ +  L +     +    E  ++ +     S  +EG+ D
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTETLNEPDF----SDSVEGSGD

Query:  ------DHEDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV
              D +D  ++ DE++ KRRVEEFIEKVN GW+EE   TS LV
Subjt:  ------DHEDVEDVEDEEDFKRRVEEFIEKVNNGWREERQRTSRLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATTCCATTTTGGAACTAGCTGCCGAGGCGGCTTCCAGCACTCTGTTCATCTTCTGCATCTTCAATTTGATCATTCTCATCGTTCTCTTCACCTCAAGACCAGT
CTTCTCCAGTTCTGATCACCAAAATCATGATGATGTGCCTCTTTCAATCGTCATTCACAGCAACACAAATGCAGAACAGAATTTCATGCTTCAGAAAAATGCCATAGTGG
ATGTGTGTGCAGTGACAGAGACCCTAAATGAACCAGACTTCAGCGACAGTGTTGAAGGGAGTGGTGATGATCATGAGGACGTCGAGGACGTCGAGGACGAGGAGGATTTC
AAAAGAAGAGTGGAAGAGTTCATTGAAAAGGTTAACAATGGGTGGAGAGAAGAAAGACAAAGAACCTCGAGATTGGTCGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATTCCATTTTGGAACTAGCTGCCGAGGCGGCTTCCAGCACTCTGTTCATCTTCTGCATCTTCAATTTGATCATTCTCATCGTTCTCTTCACCTCAAGACCAGT
CTTCTCCAGTTCTGATCACCAAAATCATGATGATGTGCCTCTTTCAATCGTCATTCACAGCAACACAAATGCAGAACAGAATTTCATGCTTCAGAAAAATGCCATAGTGG
ATGTGTGTGCAGTGACAGAGACCCTAAATGAACCAGACTTCAGCGACAGTGTTGAAGGGAGTGGTGATGATCATGAGGACGTCGAGGACGTCGAGGACGAGGAGGATTTC
AAAAGAAGAGTGGAAGAGTTCATTGAAAAGGTTAACAATGGGTGGAGAGAAGAAAGACAAAGAACCTCGAGATTGGTCGAGTAG
Protein sequenceShow/hide protein sequence
MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNAIVDVCAVTETLNEPDFSDSVEGSGDDHEDVEDVEDEEDF
KRRVEEFIEKVNNGWREERQRTSRLVE