CuGenDBv2

Gene ID	CmoCh02G010270
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S13
Genome location	Cmo_Chr02:6246191..6248102
RNA-Seq Expression	CmoCh02G010270
Synteny	CmoCh02G010270
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR012606 - Ribosomal protein S13/S15, N-terminal IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605673.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia]

3.6e-73

100

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Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

XP_010053902.1 40S ribosomal protein S13 [Eucalyptus grandis]

1.5e-71

98.58

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Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

XP_010101741.2 40S ribosomal protein S13 [Morus notabilis]

1.2e-71

98.58

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Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]

9.0e-72

98.58

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Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

XP_022958472.1 40S ribosomal protein S13-like [Cucurbita moschata]

3.6e-73

100

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Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CQC4 40S ribosomal protein S13-like

4.3e-72

98.58

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

A0A6J1DES0 40S ribosomal protein S13

5.7e-72

98.58

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Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

A0A6J1H1X6 40S ribosomal protein S13-like

1.8e-73

100

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Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

A0A6J1HJL3 40S ribosomal protein S13-like

4.3e-72

98.58

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

A0A6J1KV63 40S ribosomal protein S13-like

4.3e-72

98.58

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

1.8e-70

93.62

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGR+HS+GKGIS+SALPY+RT P WLKISSQDV E ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

P59223 40S ribosomal protein S13-1

3.9e-70

92.91

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Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ P WLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

P59224 40S ribosomal protein S13-2

1.0e-70

93.62

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ P WLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

P62302 40S ribosomal protein S13

1.7e-73

97.16

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPP WLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

Q69UI1 40S ribosomal protein S13-2

1.2e-63

85.82

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Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPP WLK ++ DV E I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

2.8e-71

92.91

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ P WLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

AT4G00100.1 ribosomal protein S13A

7.3e-72

93.62

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ P WLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTCGCATGCACAGCCGTGGGAAGGGTATTTCTGCCTCAGCGCTGCCTTACAAGAGAACTCCACCAGGTTGGCTGAAGATTTCTTCACAAGATGTAGGAGAGAACAT
TTGCAAATTCGCGAAGAAGGGACTTACACCGTCACAAATTGGCGTTATTCTTCGTGATTCCCATGGTATAGCGCAGGTCAAGAGCGTTACAGGAAGCAAGATTTTGCGAA
TTCTCAAGGCTCACGGTCTTGCTCCTGAAATTCCCGAGGATTTATACCACCTTATTAAGAAGGCAGTGTCAATTAGGAAGCATTTGGAAAGGAACAGGAAGGATAAGGAC
TCCAAATTTCGTTTGATTCTTGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAAACAAAGAAGCTTCCTCCCGTCTGGAAATATATCTATTTTCGAGCCAC
TAAGACCTAA

mRNA sequence

Show/hide mRNA sequence

CGAATTGTGAAATTAGGGTTTCTGGCATAGTGCAAAAGTAAGAGGTTGAAGAAGCTCCATTGCACTTCTATCTTCGCCGTCGTTGCCGCCATGGGTCGCATGCACAGCCG
TGGGAAGGGTATTTCTGCCTCAGCGCTGCCTTACAAGAGAACTCCACCAGGTTGGCTGAAGATTTCTTCACAAGATGTAGGAGAGAACATTTGCAAATTCGCGAAGAAGG
GACTTACACCGTCACAAATTGGCGTTATTCTTCGTGATTCCCATGGTATAGCGCAGGTCAAGAGCGTTACAGGAAGCAAGATTTTGCGAATTCTCAAGGCTCACGGTCTT
GCTCCTGAAATTCCCGAGGATTTATACCACCTTATTAAGAAGGCAGTGTCAATTAGGAAGCATTTGGAAAGGAACAGGAAGGATAAGGACTCCAAATTTCGTTTGATTCT
TGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAAACAAAGAAGCTTCCTCCCGTCTGGAAATATATCTATTTTCGAGCCACTAAGACCTAA

Protein sequence

Show/hide protein sequence

MGRMHSRGKGISASALPYKRTPPGWLKISSQDVGENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKD
SKFRLILVESRIHRLARYYKKTKKLPPVWKYIYFRATKT

CmoCh02G010270 (gene) of Cucurbita moschata (Rifu) v1 genome