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CmoCh02G010310 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G010310
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCDGSH iron-sulfur domain-containing protein NEET
Genome locationCmo_Chr02:6272136..6272980
RNA-Seq ExpressionCmoCh02G010310
SyntenyCmoCh02G010310
Gene Ontology termsGO:0010506 - regulation of autophagy (biological process)
GO:0005741 - mitochondrial outer membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR018967 - Iron-binding zinc finger, CDGSH type
IPR042216 - MitoNEET, CDGSH iron-sulfur domain
IPR045131 - CDGSH iron-sulfur domain-containing protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605678.1 CDGSH iron-sulfur domain-containing protein NEET, partial [Cucurbita argyrosperma subsp. sororia]4.2e-5299.04Show/hide
Query:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASLPATSALPTTRPPH NFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

KAG7035586.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita argyrosperma subsp. argyrosperma]1.8e-5097.12Show/hide
Query:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASLPATSALPTT PPH NFTVGG+PRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

XP_022958373.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita moschata]8.5e-53100Show/hide
Query:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

XP_022996357.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita maxima]1.1e-4997.12Show/hide
Query:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASL ATSALPTTRPPHGNFTVGGMPRRRM VVVRAEGG+AINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

XP_023534172.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita pepo subsp. pepo]3.3e-4996.15Show/hide
Query:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASLPATSALPTTRPPH NFT+GGMPRRRM VVVRAEGG+AINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

TrEMBL top hitse value%identityAlignment
A0A2U1LM16 2 iron, 2 sulfur cluster binding protein7.6e-3168.87Show/hide
Query:  MASLPATSALPTTRPPHG--NFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGP
        MAS      +P T  P      T G     R +VVVRAEGG  INP IRK+EDKVVD+VVV +LAKPLT YCRCWRS TFPLCDGSHVKHNKATGDNVGP
Subjt:  MASLPATSALPTTRPPHG--NFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGP

Query:  LLLKKQ
        LLLKKQ
Subjt:  LLLKKQ

A0A6J1AIS6 CDGSH iron-sulfur domain-containing protein NEET7.6e-3170.71Show/hide
Query:  ATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        +++A P   P  G  T+   P R   VVVRAE GQ INP IRK+E+KVVDSVVV +L+KPLT YCRCWRS TFPLCDGSHVKHNKATGDNVGPLLLKKQ
Subjt:  ATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

A0A6J1H2X5 CDGSH iron-sulfur domain-containing protein NEET4.1e-53100Show/hide
Query:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

A0A6J1K1P5 CDGSH iron-sulfur domain-containing protein NEET5.6e-5097.12Show/hide
Query:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASL ATSALPTTRPPHGNFTVGGMPRRRM VVVRAEGG+AINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

A0A6P5YA74 CDGSH iron-sulfur domain-containing protein NEET-like7.6e-3174.47Show/hide
Query:  PTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        P   P  G  TV   PRR   VVVRAE GQ INP IRK+E+KVVDS+VV +L+KPLT YCRCWRS TFPLCDGSHVKHNKATGDNVGPLLLKKQ
Subjt:  PTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

SwissProt top hitse value%identityAlignment
B9EPI1 CDGSH iron-sulfur domain-containing protein 2A7.8e-1758.73Show/hide
Query:  INPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + + DL +    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q6AZG1 CDGSH iron-sulfur domain-containing protein 2B7.8e-1760.32Show/hide
Query:  INPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + + DL      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q6PCF8 CDGSH iron-sulfur domain-containing protein 2A7.8e-1748.19Show/hide
Query:  VGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        +G +  R  ++  + +    IN  I+K   KVV+ + + DL      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+LKK+
Subjt:  VGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q7T326 CDGSH iron-sulfur domain-containing protein 22.1e-1760.32Show/hide
Query:  INPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + + DL  P   YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q9FLI7 CDGSH iron-sulfur domain-containing protein NEET1.1e-3179.49Show/hide
Query:  RRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        +++ +VVVRAEGG  INP IRK+EDKVVDSVVV +L+K +TPYCRCWRS TFPLCDGSHVKHNKA GDNVGPLLLKKQ
Subjt:  RRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

Arabidopsis top hitse value%identityAlignment
AT5G51720.1 2 iron, 2 sulfur cluster binding8.0e-3379.49Show/hide
Query:  RRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        +++ +VVVRAEGG  INP IRK+EDKVVDSVVV +L+K +TPYCRCWRS TFPLCDGSHVKHNKA GDNVGPLLLKKQ
Subjt:  RRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCGCTTCCTGCCACTTCCGCCTTACCAACAACCCGTCCTCCCCACGGTAACTTCACCGTCGGCGGAATGCCGCGGCGGCGCATGGTGGTGGTGGTCAGAGCCGA
AGGCGGCCAAGCCATAAACCCAGCAATCAGGAAGAGCGAGGACAAAGTGGTGGACTCCGTGGTTGTCGCCGACCTTGCCAAGCCCCTCACACCCTATTGCAGATGTTGGA
GGTCAGCCACATTTCCTCTGTGTGATGGAAGCCATGTTAAGCACAACAAGGCCACCGGAGATAATGTCGGCCCTTTGCTCTTAAAGAAGCAATAG
mRNA sequenceShow/hide mRNA sequence
TATTATGTTGTTTGGATTAGGGAAGAAGGACGTGTCAAAGGGAGATCCACCGATTAGGCCGGTTTAAGGCACCTTTAAACCGTGCCCTCCACACGTTCATCATCCATTAC
CACATTTCCTTCACTCACATCACCACCCTTCCTCTGCTCCTCCAATGGCCTCGCTTCCTGCCACTTCCGCCTTACCAACAACCCGTCCTCCCCACGGTAACTTCACCGTC
GGCGGAATGCCGCGGCGGCGCATGGTGGTGGTGGTCAGAGCCGAAGGCGGCCAAGCCATAAACCCAGCAATCAGGAAGAGCGAGGACAAAGTGGTGGACTCCGTGGTTGT
CGCCGACCTTGCCAAGCCCCTCACACCCTATTGCAGATGTTGGAGGTCAGCCACATTTCCTCTGTGTGATGGAAGCCATGTTAAGCACAACAAGGCCACCGGAGATAATG
TCGGCCCTTTGCTCTTAAAGAAGCAATAGAGACACACTCTTTCATGTTTTTTCTTCCAACTTCTTCTCTGTTCTTGAGTTTCAATTGGATTACTGTCAACAAATCATTCT
ACTTTTATTTGCATTCCCATCCCTCATCTTTATAAGATTATCAATTTACTCCTTATCACCCTTCAAATCTTGCATACAACTCCCACCGCCCCATAAACGTTTGATCTTTA
TTGCTATATTTCAATTTTTTTAAGTCGTTTTTAGTCCTTCTATTCTCAAAATTGCTCTCATTCGCAAATTCTAC
Protein sequenceShow/hide protein sequence
MASLPATSALPTTRPPHGNFTVGGMPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ