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CmoCh02G010490 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G010490
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA polymerase delta subunit 4
Genome locationCmo_Chr02:6400771..6401864
RNA-Seq ExpressionCmoCh02G010490
SyntenyCmoCh02G010490
Gene Ontology termsGO:0000731 - DNA synthesis involved in DNA repair (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0043625 - delta DNA polymerase complex (cellular component)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR007218 - DNA polymerase delta, subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605696.1 DNA polymerase delta subunit 4, partial [Cucurbita argyrosperma subsp. sororia]2.9e-6098.37Show/hide
Query:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
        MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSD VQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
Subjt:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP

Query:  PKEIETLLKGGKVQLECLWASRI
        PKEIE+LLKGGKVQLECLWASRI
Subjt:  PKEIETLLKGGKVQLECLWASRI

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]4.4e-4880.8Show/hide
Query:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL
        MAS RGG+KDFYKQRK+SG+S  K SKPSSRKTKS ANSA+L S+ VQPAAL+SHGSLDL+DDYGESEN+LRQFDMNMAYGPCLGMTRM RWE A  LGL
Subjt:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL

Query:  NPPKEIETLLKGGKVQLECLWASRI
        NPPK+I TLLK GKVQLECLW SR+
Subjt:  NPPKEIETLLKGGKVQLECLWASRI

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]2.0e-61100Show/hide
Query:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
        MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
Subjt:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP

Query:  PKEIETLLKGGKVQLECLWASRI
        PKEIETLLKGGKVQLECLWASRI
Subjt:  PKEIETLLKGGKVQLECLWASRI

XP_022995740.1 uncharacterized protein LOC111491182 [Cucurbita maxima]5.0e-6098.37Show/hide
Query:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
        MASARGGMKDFYKQRKNSGVSKVSKPSS KTKSRA+SATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
Subjt:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP

Query:  PKEIETLLKGGKVQLECLWASRI
        PKEIETLLKGGKVQLECLWASRI
Subjt:  PKEIETLLKGGKVQLECLWASRI

XP_023532644.1 uncharacterized protein LOC111794744 [Cucurbita pepo subsp. pepo]3.8e-6098.37Show/hide
Query:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
        MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPA LISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELA KLGLNP
Subjt:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP

Query:  PKEIETLLKGGKVQLECLWASRI
        PKEIETLLKGGKVQLECLWASRI
Subjt:  PKEIETLLKGGKVQLECLWASRI

TrEMBL top hitse value%identityAlignment
A0A0A0KND6 Uncharacterized protein3.1e-4780Show/hide
Query:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL
        MAS RGG+KDFYKQRK+SG+S  K SKPSSRKTKS ANSA+L SD VQPAAL+SHGSLDL+DDYG SEN LRQFDMN AYGPCLGMTRM RWE A  LGL
Subjt:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL

Query:  NPPKEIETLLKGGKVQLECLWASRI
        NPPK+I TLLK GKVQLECLW SR+
Subjt:  NPPKEIETLLKGGKVQLECLWASRI

A0A1S3CT23 DNA polymerase delta subunit 42.1e-4880.8Show/hide
Query:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL
        MAS RGG+KDFYKQRK+SG+S  K SKPSSRKTKS ANSA+L S+ VQPAAL+SHGSLDL+DDYGESEN+LRQFDMNMAYGPCLGMTRM RWE A  LGL
Subjt:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL

Query:  NPPKEIETLLKGGKVQLECLWASRI
        NPPK+I TLLK GKVQLECLW SR+
Subjt:  NPPKEIETLLKGGKVQLECLWASRI

A0A5A7UNL0 DNA polymerase delta subunit 42.1e-4880.8Show/hide
Query:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL
        MAS RGG+KDFYKQRK+SG+S  K SKPSSRKTKS ANSA+L S+ VQPAAL+SHGSLDL+DDYGESEN+LRQFDMNMAYGPCLGMTRM RWE A  LGL
Subjt:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL

Query:  NPPKEIETLLKGGKVQLECLWASRI
        NPPK+I TLLK GKVQLECLW SR+
Subjt:  NPPKEIETLLKGGKVQLECLWASRI

A0A6J1H180 uncharacterized protein LOC1114591439.8e-62100Show/hide
Query:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
        MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
Subjt:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP

Query:  PKEIETLLKGGKVQLECLWASRI
        PKEIETLLKGGKVQLECLWASRI
Subjt:  PKEIETLLKGGKVQLECLWASRI

A0A6J1K4T3 uncharacterized protein LOC1114911822.4e-6098.37Show/hide
Query:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
        MASARGGMKDFYKQRKNSGVSKVSKPSS KTKSRA+SATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
Subjt:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP

Query:  PKEIETLLKGGKVQLECLWASRI
        PKEIETLLKGGKVQLECLWASRI
Subjt:  PKEIETLLKGGKVQLECLWASRI

SwissProt top hitse value%identityAlignment
O59835 DNA polymerase delta subunit 45.6e-0651.16Show/hide
Query:  ENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLL
        E IL  FD    YGP LGMTRM+RW+ A+   LNPP+ +  +L
Subjt:  ENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLL

Q3T0X9 DNA polymerase delta subunit 42.1e-0844.07Show/hide
Query:  ESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLLKG--GKVQLEC-LW
        E   +LRQFD+   YGPC G+TR++RW  A ++GL PP E+  +L+   G  + +C LW
Subjt:  ESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLLKG--GKVQLEC-LW

Q9CWP8 DNA polymerase delta subunit 42.3e-0752.38Show/hide
Query:  ILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLLK
        +LRQFD+   YGPC G+TR++RW  A ++GL PP E+  +LK
Subjt:  ILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLLK

Q9HCU8 DNA polymerase delta subunit 42.7e-0843.75Show/hide
Query:  RDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLLK--GGKVQLEC-LW
        RD+      +LRQFD+   YGPC G+TR++RW  A+++GL PP E+  +LK   G  + +C LW
Subjt:  RDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLLK--GGKVQLEC-LW

Arabidopsis top hitse value%identityAlignment
AT1G09815.1 polymerase delta 45.9e-3559.52Show/hide
Query:  MASARGGMKDFYKQRKNS---GVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLG
        MA+    +K FYKQ K++   G+SK SKPSSRK   + ++A   SD  QPAALISHGS+DL +DY + E +LRQFDMN+ YGPCLGMTR++RWE A +LG
Subjt:  MASARGGMKDFYKQRKNS---GVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLG

Query:  LNPPKEIETLLKGGKVQLECLWASRI
        +NPP EIE LLK GKVQ +CLW  R+
Subjt:  LNPPKEIETLLKGGKVQLECLWASRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCGGCTCGAGGAGGGATGAAAGATTTCTACAAGCAAAGGAAGAACAGTGGAGTCTCTAAGGTTTCAAAGCCCTCTTCTAGAAAAACCAAATCTCGGGCCAACTC
TGCAACTTTGGACTCCGATGGCGTTCAACCGGCGGCTCTTATTTCTCACGGTTCCCTCGATCTCCGAGATGATTATGGTGAGTCTGAGAATATACTGAGGCAATTTGACA
TGAACATGGCCTATGGACCTTGCCTTGGAATGACAAGAATGGAACGATGGGAGCTTGCCCGTAAGCTTGGTTTGAACCCTCCAAAAGAAATTGAGACACTCTTAAAGGGT
GGGAAAGTGCAGTTAGAGTGCTTGTGGGCTTCCCGAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATATATATATATATAAGATAATGATATTTCAACTCAAAAAAGAAAAAAATGTATTTTTGAAAGAAATATTAATGGGCCGAAGCTCGATCGGGCGCCCCGGCCCAGATAAC
ATTAGGGTCCATTTAAAGAGAAAGGTGCGATTAAAATTCAAATTTTGAAAATCGATCAGAGAGAGTGAGAGGAAGAAAAATGGCATCGGCTCGAGGAGGGATGAAAGATT
TCTACAAGCAAAGGAAGAACAGTGGAGTCTCTAAGGTTTCAAAGCCCTCTTCTAGAAAAACCAAATCTCGGGCCAACTCTGCAACTTTGGACTCCGATGGCGTTCAACCG
GCGGCTCTTATTTCTCACGGTTCCCTCGATCTCCGAGATGATTATGGTGAGTCTGAGAATATACTGAGGCAATTTGACATGAACATGGCCTATGGACCTTGCCTTGGAAT
GACAAGAATGGAACGATGGGAGCTTGCCCGTAAGCTTGGTTTGAACCCTCCAAAAGAAATTGAGACACTCTTAAAGGGTGGGAAAGTGCAGTTAGAGTGCTTGTGGGCTT
CCCGAATCTAA
Protein sequenceShow/hide protein sequence
MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIETLLKG
GKVQLECLWASRI