CuGenDBv2

Gene ID	CmoCh02G010820
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	protein SHORTAGE IN CHIASMATA 1
Genome location	Cmo_Chr02:6583002..6588898
RNA-Seq Expression	CmoCh02G010820
Synteny	CmoCh02G010820
Gene Ontology terms	GO:0007131 - reciprocal meiotic recombination (biological process)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605724.1 hypothetical protein SDJN03_03041, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-40

95.4

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Query:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQSLS
        MR+RFLHVDYFAPENKFFHRFPI SPRFLKPLSTVGDLLCFDFVPE SLGIDWLTIDSAVSKFFDDVLPRRIDVDNG LGAGGQSLS
Subjt:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQSLS

XP_022155768.1 protein SHORTAGE IN CHIASMATA 1 [Momordica charantia]

1.3e-23

74.12

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Query:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS
        MRTRFL++DYFAPEN  F R P+P     +PLSTV DLL FD VPEISLGID LTIDSA+SKFFDDVLPRRID DNG L AGG+S
Subjt:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS

XP_022971832.1 protein SHORTAGE IN CHIASMATA 1 isoform X1 [Cucurbita maxima]

2.4e-22

68.24

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Query:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS
        MRTRFL++D+FAP N+ FHR P+P      PLSTVGDLL FDF+PEISLGID L+IDSA+S+FFDDVLPRRI+ D+ Y  AG QS
Subjt:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS

XP_022971833.1 protein SHORTAGE IN CHIASMATA 1 isoform X2 [Cucurbita maxima]

2.4e-22

68.24

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Query:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS
        MRTRFL++D+FAP N+ FHR P+P      PLSTVGDLL FDF+PEISLGID L+IDSA+S+FFDDVLPRRI+ D+ Y  AG QS
Subjt:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS

XP_038887320.1 protein SHORTAGE IN CHIASMATA 1 [Benincasa hispida]

2.6e-24

74.07

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Query:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGA
        MRTRFL +DYFAPEN  FHRFP+P     KPLSTVGDLL FDFVP++SLGID LTIDSA++KFFDDV+PRRID DN Y  A
Subjt:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DNT5 protein SHORTAGE IN CHIASMATA 1

6.2e-24

74.12

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Query:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS
        MRTRFL++DYFAPEN  F R P+P     +PLSTV DLL FD VPEISLGID LTIDSA+SKFFDDVLPRRID DNG L AGG+S
Subjt:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS

A0A6J1GL72 protein SHORTAGE IN CHIASMATA 1 isoform X1

4.5e-22

68.24

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Query:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS
        MRTRFL++D+FAP N+ FHR P+P      PLSTVGDLL FDF+PEISLGID L+IDSA+S+FFDDVLPRRI  D+ Y  AG QS
Subjt:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS

A0A6J1I320 protein SHORTAGE IN CHIASMATA 1 isoform X1

1.2e-22

68.24

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Query:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS
        MRTRFL++D+FAP N+ FHR P+P      PLSTVGDLL FDF+PEISLGID L+IDSA+S+FFDDVLPRRI+ D+ Y  AG QS
Subjt:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS

A0A6J1I842 protein SHORTAGE IN CHIASMATA 1 isoform X2

1.2e-22

68.24

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Query:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS
        MRTRFL++D+FAP N+ FHR P+P      PLSTVGDLL FDF+PEISLGID L+IDSA+S+FFDDVLPRRI+ D+ Y  AG QS
Subjt:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS

A0A6J1I9N8 protein SHORTAGE IN CHIASMATA 1 isoform X3

1.2e-22

68.24

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Query:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS
        MRTRFL++D+FAP N+ FHR P+P      PLSTVGDLL FDF+PEISLGID L+IDSA+S+FFDDVLPRRI+ D+ Y  AG QS
Subjt:  MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQS

SwissProt top hits

e value

%identity

Alignment

F4KG50 Protein SHORTAGE IN CHIASMATA 1

5.6e-06

40.96

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Query:  MRTRFLHVDYFA--PENKF----FHRFPIPSPRFLKPLSTVG--DLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVD
        MRTRFL++DYF+  P + F    F   P P   F  P+   G  D L F  +  +S+ I  L I++A+SKF  DV+P R+ VD
Subjt:  MRTRFLHVDYFA--PENKF----FHRFPIPSPRFLKPLSTVG--DLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVD

Arabidopsis top hits

e value

%identity

Alignment

AT5G52290.1 shortage in chiasmata 1

4.0e-07

40.96

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Query:  MRTRFLHVDYFA--PENKF----FHRFPIPSPRFLKPLSTVG--DLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVD
        MRTRFL++DYF+  P + F    F   P P   F  P+   G  D L F  +  +S+ I  L I++A+SKF  DV+P R+ VD
Subjt:  MRTRFLHVDYFA--PENKF----FHRFPIPSPRFLKPLSTVG--DLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVD

Sequences

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CDS sequence

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ATGCGAACTCGGTTCCTCCACGTTGATTACTTCGCTCCGGAAAACAAATTCTTCCACCGATTCCCTATACCCTCACCTCGCTTTTTGAAGCCACTTTCCACCGTCGGCGA
CCTCCTCTGCTTCGATTTTGTCCCTGAAATCTCTCTCGGAATTGATTGGTTAACGATCGATTCTGCTGTCTCCAAGTTCTTTGACGACGTTCTTCCTCGGAGAATCGATG
TTGATAATGGTTATCTCGGTGCTGGTGGTCAGTCTTTGAGTGGTGATTTATGCTTTGATATTTCAAACTCTTCAACTAGCAAGGAGCTACTCTGCCGCGGTGATGTCGTG
ACCATGGCAGAGAAACCAAAGCACAGGGGGATGTTTCGCACAGTCATTACAAGTTGTTGTCTTTCGCCTTCTACTTCTGCAAATTTGAGACTTATTTCTGAGTATCTCTC
TTCCATTTCCTTCAGTTCTCTTTCCATAGTTTGGTTCCTCTCCTTTAGGGAAGACATCTCCTTAAGGAGATCAATATTACAGTCCTCGGACTATTTGCAGAGTCGCCAAA
ACTTCCATCTGAAGCTGAACCCAGGGACCATTCTGTATTTGATCGCTCGTGTGCTTGGTAGAGCTACAACGGATGGAGAGAGATAG

mRNA sequence

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Protein sequence

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MRTRFLHVDYFAPENKFFHRFPIPSPRFLKPLSTVGDLLCFDFVPEISLGIDWLTIDSAVSKFFDDVLPRRIDVDNGYLGAGGQSLSGDLCFDISNSSTSKELLCRGDVV
TMAEKPKHRGMFRTVITSCCLSPSTSANLRLISEYLSSISFSSLSIVWFLSFREDISLRRSILQSSDYLQSRQNFHLKLNPGTILYLIARVLGRATTDGER

CmoCh02G010820 (gene) of Cucurbita moschata (Rifu) v1 genome