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CmoCh02G011290 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G011290
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTetratricopeptide-like helical
Genome locationCmo_Chr02:6846026..6848432
RNA-Seq ExpressionCmoCh02G011290
SyntenyCmoCh02G011290
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037891.1 putative TPR repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-1238.41Show/hide
Query:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------
        I+  +  IDLKP HVDALY LGGLY+D                                                                         
Subjt:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------

Query:  ----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN
            +N EGAFIVVEASKFKT+GEKT+LR ELSNALKIRSFQKI RLNRC+
Subjt:  ----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN

XP_022940361.1 uncharacterized TPR repeat-containing protein At1g05150-like [Cucurbita moschata]3.9e-1238.41Show/hide
Query:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------
        I+  +  IDLKP HVDALY LGGLY+D                                                                         
Subjt:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------

Query:  ----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN
            +N EGAFIVVEASKFKT+GEKT+LR ELSNALKIRSFQKI RLNRC+
Subjt:  ----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN

XP_022981917.1 uncharacterized TPR repeat-containing protein At1g05150-like [Cucurbita maxima]1.1e-1137.75Show/hide
Query:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------
        I+  +  IDLKP HVDALY LGGLY+D                                                                         
Subjt:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------

Query:  ----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN
            +N EGAFIVVEASKFKT+GEKT+LR ELS+ALKIRSFQKI RLNRC+
Subjt:  ----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN

XP_023525397.1 uncharacterized TPR repeat-containing protein At1g05150-like [Cucurbita pepo subsp. pepo]6.6e-1238.41Show/hide
Query:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------
        I+  +  IDLKP HVDALY LGGLY+D                                                                         
Subjt:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------

Query:  ----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN
            +N EGAFIVVEASKFKT+GEKT+LR ELSNALKIRSFQKI RLNRC+
Subjt:  ----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN

XP_023535311.1 uncharacterized protein LOC111796785 [Cucurbita pepo subsp. pepo]7.5e-3260.14Show/hide
Query:  MEYAESAQVEMNYYSLSLELEQPKAQIQSLEGH------------------------------------------------IDLKPSHVDALYILGGLYV
        MEYAESAQVEMNYYSLSLELEQ KAQIQ LEGH                                                IDLK  HVDALYILGGLYV
Subjt:  MEYAESAQVEMNYYSLSLELEQPKAQIQSLEGH------------------------------------------------IDLKPSHVDALYILGGLYV

Query:  DSNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN
        +SN EGAFIVVEASKFKT+GEKT+LR ELSNALKIRSFQKI RLNRC+
Subjt:  DSNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN

TrEMBL top hitse value%identityAlignment
A0A067GYV1 TPR_REGION domain-containing protein3.6e-1140.34Show/hide
Query:  IQSLEGHIDLKPSHVDALYILGGLYVD---------------------------------------------SNDEGAFIVVEASKFKTVGEKTILRLEL
        I+  +  IDLKP HVDALY LGGLY+D                                             +N EG F +VE SKFKTVGE+T +R +L
Subjt:  IQSLEGHIDLKPSHVDALYILGGLYVD---------------------------------------------SNDEGAFIVVEASKFKTVGEKTILRLEL

Query:  SNALKIRSFQKIIRLNRCN
        +NAL+IR+FQKI RL+RC+
Subjt:  SNALKIRSFQKIIRLNRCN

A0A0A0M0F9 Uncharacterized protein3.6e-1134.81Show/hide
Query:  LEQPKAQIQSLEGHIDLKPSHVDALYILGGLYVD------------------------------------------------------------------
        + + +  I+  +  IDLKP HVDALY LGGLY+D                                                                  
Subjt:  LEQPKAQIQSLEGHIDLKPSHVDALYILGGLYVD------------------------------------------------------------------

Query:  -----------SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN
                   +N EG+FIVVEASKFKT+GEKT+LR ELSNAL+IR+FQKI RLNRC+
Subjt:  -----------SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN

A0A2H5NSN2 Uncharacterized protein3.6e-1140.34Show/hide
Query:  IQSLEGHIDLKPSHVDALYILGGLYVD---------------------------------------------SNDEGAFIVVEASKFKTVGEKTILRLEL
        I+  +  IDLKP HVDALY LGGLY+D                                             +N EG F +VE SKFKTVGE+T +R +L
Subjt:  IQSLEGHIDLKPSHVDALYILGGLYVD---------------------------------------------SNDEGAFIVVEASKFKTVGEKTILRLEL

Query:  SNALKIRSFQKIIRLNRCN
        +NAL+IR+FQKI RL+RC+
Subjt:  SNALKIRSFQKIIRLNRCN

A0A6J1FI88 uncharacterized TPR repeat-containing protein At1g05150-like1.9e-1238.41Show/hide
Query:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------
        I+  +  IDLKP HVDALY LGGLY+D                                                                         
Subjt:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------

Query:  ----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN
            +N EGAFIVVEASKFKT+GEKT+LR ELSNALKIRSFQKI RLNRC+
Subjt:  ----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN

A0A6J1IV99 uncharacterized TPR repeat-containing protein At1g05150-like5.5e-1237.75Show/hide
Query:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------
        I+  +  IDLKP HVDALY LGGLY+D                                                                         
Subjt:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------

Query:  ----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN
            +N EGAFIVVEASKFKT+GEKT+LR ELS+ALKIRSFQKI RLNRC+
Subjt:  ----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN

SwissProt top hitse value%identityAlignment
O23052 Uncharacterized TPR repeat-containing protein At1g051505.5e-0930.92Show/hide
Query:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------
        I+  +  IDLKP HVDALY LGGLY+D                                                                         
Subjt:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------

Query:  -----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN
             +  EG FIVVE SKFKTVGEKT LR +L+ AL+IR+FQ++ RL +C+
Subjt:  -----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN

Q8S8L9 Uncharacterized TPR repeat-containing protein At2g324502.5e-0930.92Show/hide
Query:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------
        I+  +  IDLKP HVDALY LGGLY+D                                                                         
Subjt:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------

Query:  -----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN
             +N+EG FIVVE+SKFKTVGEKT LR +L+ AL++R+FQ++ RL +C+
Subjt:  -----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN

Arabidopsis top hitse value%identityAlignment
AT1G05150.1 Calcium-binding tetratricopeptide family protein3.9e-1030.92Show/hide
Query:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------
        I+  +  IDLKP HVDALY LGGLY+D                                                                         
Subjt:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------

Query:  -----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN
             +  EG FIVVE SKFKTVGEKT LR +L+ AL+IR+FQ++ RL +C+
Subjt:  -----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN

AT2G32450.1 Calcium-binding tetratricopeptide family protein1.7e-1030.92Show/hide
Query:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------
        I+  +  IDLKP HVDALY LGGLY+D                                                                         
Subjt:  IQSLEGHIDLKPSHVDALYILGGLYVD-------------------------------------------------------------------------

Query:  -----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN
             +N+EG FIVVE+SKFKTVGEKT LR +L+ AL++R+FQ++ RL +C+
Subjt:  -----SNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTGTCATTAGAATTGGAGCAACCAAAAGCTCAAATTCAATCATTGGAGGGTCATATCGACTTGAA
GCCTAGCCATGTAGATGCTTTGTATATTTTGGGTGGACTTTACGTGGACTCAAATGATGAAGGGGCTTTTATAGTTGTGGAAGCCTCAAAGTTTAAGACCGTTGGAGAGA
AGACTATTTTGAGACTGGAACTGTCAAATGCTCTCAAAATTAGATCTTTTCAGAAGATTATCAGATTGAATCGATGCAATACAACACAAGCTGTAGCAACCCTAATGGGC
TTCCCACTAGATTTGGAGACTGCAAATCCATTCAAAGTTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTGTCATTAGAATTGGAGCAACCAAAAGCTCAAATTCAATCATTGGAGGGTCATATCGACTTGAA
GCCTAGCCATGTAGATGCTTTGTATATTTTGGGTGGACTTTACGTGGACTCAAATGATGAAGGGGCTTTTATAGTTGTGGAAGCCTCAAAGTTTAAGACCGTTGGAGAGA
AGACTATTTTGAGACTGGAACTGTCAAATGCTCTCAAAATTAGATCTTTTCAGAAGATTATCAGATTGAATCGATGCAATACAACACAAGCTGTAGCAACCCTAATGGGC
TTCCCACTAGATTTGGAGACTGCAAATCCATTCAAAGTTTCATGA
Protein sequenceShow/hide protein sequence
MEYAESAQVEMNYYSLSLELEQPKAQIQSLEGHIDLKPSHVDALYILGGLYVDSNDEGAFIVVEASKFKTVGEKTILRLELSNALKIRSFQKIIRLNRCNTTQAVATLMG
FPLDLETANPFKVS