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CmoCh02G011390 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G011390
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSuccinate dehydrogenase assembly factor 4, mitochondrial
Genome locationCmo_Chr02:6904181..6904513
RNA-Seq ExpressionCmoCh02G011390
SyntenyCmoCh02G011390
Gene Ontology termsGO:0008652 - cellular amino acid biosynthetic process (biological process)
GO:0009064 - glutamine family amino acid metabolic process (biological process)
GO:0034553 - mitochondrial respiratory chain complex II assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors (molecular function)
GO:0043167 - ion binding (molecular function)
InterPro domainsIPR012875 - Succinate dehydrogenase assembly factor 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605777.1 Succinate dehydrogenase assembly factor 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.1e-5099.09Show/hide
Query:  MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD
        MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPG+EQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD
Subjt:  MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD

Query:  WERNGRCYDF
        WERNGRCYDF
Subjt:  WERNGRCYDF

KGN49871.1 hypothetical protein Csa_000062 [Cucumis sativus]1.6e-3373.87Show/hide
Query:  MSSNLTRLF-SPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYG
        MSSNL+RLF SPP+L+AL AV+R T  S+SR VSSS+NQQPSRLE+GV  EEQREAGKGS P++HEAAGDDR  +DEG D  K T E+GGPKGPEPTRYG
Subjt:  MSSNLTRLF-SPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYG

Query:  DWERNGRCYDF
        DWER GRC DF
Subjt:  DWERNGRCYDF

XP_022957978.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata]4.9e-51100Show/hide
Query:  MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD
        MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD
Subjt:  MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD

Query:  WERNGRCYDF
        WERNGRCYDF
Subjt:  WERNGRCYDF

XP_022995844.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima]5.5e-5098.18Show/hide
Query:  MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD
        MSSNLTRLFSPPSLTALSAVNR TS SVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD
Subjt:  MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD

Query:  WERNGRCYDF
        WERNGRCYDF
Subjt:  WERNGRCYDF

XP_023532848.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo]1.1e-5099.09Show/hide
Query:  MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD
        MSSNLTRLFSPPSLT+LSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD
Subjt:  MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD

Query:  WERNGRCYDF
        WERNGRCYDF
Subjt:  WERNGRCYDF

TrEMBL top hitse value%identityAlignment
A0A0A0KQ66 Succinate dehydrogenase assembly factor 4, mitochondrial7.7e-3473.87Show/hide
Query:  MSSNLTRLF-SPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYG
        MSSNL+RLF SPP+L+AL AV+R T  S+SR VSSS+NQQPSRLE+GV  EEQREAGKGS P++HEAAGDDR  +DEG D  K T E+GGPKGPEPTRYG
Subjt:  MSSNLTRLF-SPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYG

Query:  DWERNGRCYDF
        DWER GRC DF
Subjt:  DWERNGRCYDF

A0A5A7TMD3 Succinate dehydrogenase assembly factor 4, mitochondrial6.5e-3372.97Show/hide
Query:  MSSNLTRLF-SPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYG
        MSS+L+RLF SPP+L+AL  V R TS S+SR VSSS+NQQPSR EQGV  EEQREA KGS P+QHEAAGDDR S+D+G D  K   E+GGPKG EPTRYG
Subjt:  MSSNLTRLF-SPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYG

Query:  DWERNGRCYDF
        DWERNGRCYDF
Subjt:  DWERNGRCYDF

A0A6J1H1T7 Succinate dehydrogenase assembly factor 4, mitochondrial2.4e-51100Show/hide
Query:  MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD
        MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD
Subjt:  MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD

Query:  WERNGRCYDF
        WERNGRCYDF
Subjt:  WERNGRCYDF

A0A6J1K722 Succinate dehydrogenase assembly factor 4, mitochondrial2.6e-5098.18Show/hide
Query:  MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD
        MSSNLTRLFSPPSLTALSAVNR TS SVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD
Subjt:  MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGD

Query:  WERNGRCYDF
        WERNGRCYDF
Subjt:  WERNGRCYDF

M5XLA3 Succinate dehydrogenase assembly factor 4, mitochondrial8.0e-1550.86Show/hide
Query:  MSSNLTRLFSPPSLTALSAVNRATSI------SVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPE
        M+ NL RLFS  S T LS  +RA  +      SVSRL+ SSA Q  S+ +   P +EQRE     L      A DD D +++   +NK TGE+GGPKGPE
Subjt:  MSSNLTRLFSPPSLTALSAVNRATSI------SVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPE

Query:  PTRYGDWERNGRCYDF
        PTR+GDWERNGRC DF
Subjt:  PTRYGDWERNGRCYDF

SwissProt top hitse value%identityAlignment
Q54Y25 Succinate dehydrogenase assembly factor 4, mitochondrial1.6e-0434.34Show/hide
Query:  LTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGE--EQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF
        L A    N+      S  ++++ N   +     +  +  E  +  +  L D  E    + D ++    VN  T E+GGPKGPEPTRY DWERNGR  DF
Subjt:  LTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGE--EQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF

Q5VUM1 Succinate dehydrogenase assembly factor 4, mitochondrial1.3e-0639.82Show/hide
Query:  SNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGA-----DVNKATGEVGGPKGPEPTR
        S L  L S  S TA  A          R  SSS   +   ++Q +         K  LP+    A +D   E E       DVN  T E GGP+GPEPTR
Subjt:  SNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGA-----DVNKATGEVGGPKGPEPTR

Query:  YGDWERNGRCYDF
        YGDWER GRC DF
Subjt:  YGDWERNGRCYDF

Q8BTE0 Succinate dehydrogenase assembly factor 4, mitochondrial5.4e-0841.18Show/hide
Query:  ATSISVSRLVSSSANQQPSRL---------EQGVPGEEQREAGKGSLP----DQHEAAGDDRDS-EDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCY
        +T++SVSR+       +PS L         ++G P   ++   K  LP    D  E + ++R+  +    DVN  T E GGPKGPEPTRYGDWER GRC 
Subjt:  ATSISVSRLVSSSANQQPSRL---------EQGVPGEEQREAGKGSLP----DQHEAAGDDRDS-EDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCY

Query:  DF
        DF
Subjt:  DF

Q9VLU6 Succinate dehydrogenase assembly factor 4, mitochondrial4.5e-0776.67Show/hide
Query:  NKATGEVGGPKGPEPTRYGDWERNGRCYDF
        N  TGE+GGP GPEPTRYGDWER GR  DF
Subjt:  NKATGEVGGPKGPEPTRYGDWERNGRCYDF

Arabidopsis top hitse value%identityAlignment
AT5G67490.1 unknown protein5.0e-0942.42Show/hide
Query:  ISVSRLVSSSANQQPSR-LEQGVPGEEQ-----REAGKGSLPDQHEAAGDDRDSEDE--------GADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF
        I+ SR VSS   +  SR L  G P   Q     ++  +   PDQ+         E+E        G  VN+ TGE+GGP+GPEPTRYGDWE+ GRC DF
Subjt:  ISVSRLVSSSANQQPSR-LEQGVPGEEQ-----REAGKGSLPDQHEAAGDDRDSEDE--------GADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCAATCTCACCCGTCTATTCTCGCCGCCTAGTCTCACCGCTCTATCGGCGGTGAATCGCGCCACTTCCATTTCGGTGAGTCGACTCGTCTCCTCCTCGGCGAA
TCAGCAACCTTCTCGATTGGAGCAAGGTGTTCCCGGCGAGGAGCAACGAGAAGCTGGAAAAGGAAGTTTGCCGGATCAACACGAGGCTGCCGGTGATGATCGAGATAGTG
AAGATGAGGGAGCTGATGTGAACAAAGCGACCGGCGAGGTCGGTGGACCTAAAGGTCCCGAGCCAACTCGCTATGGCGATTGGGAAAGAAACGGTCGGTGCTACGATTTT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCAATCTCACCCGTCTATTCTCGCCGCCTAGTCTCACCGCTCTATCGGCGGTGAATCGCGCCACTTCCATTTCGGTGAGTCGACTCGTCTCCTCCTCGGCGAA
TCAGCAACCTTCTCGATTGGAGCAAGGTGTTCCCGGCGAGGAGCAACGAGAAGCTGGAAAAGGAAGTTTGCCGGATCAACACGAGGCTGCCGGTGATGATCGAGATAGTG
AAGATGAGGGAGCTGATGTGAACAAAGCGACCGGCGAGGTCGGTGGACCTAAAGGTCCCGAGCCAACTCGCTATGGCGATTGGGAAAGAAACGGTCGGTGCTACGATTTT
TGA
Protein sequenceShow/hide protein sequence
MSSNLTRLFSPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF