CuGenDBv2

Gene ID	CmoCh02G011600
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat-containing protein mitochondrial
Genome location	Cmo_Chr02:6996951..7000803
RNA-Seq Expression	CmoCh02G011600
Synteny	CmoCh02G011600
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605795.1 hypothetical protein SDJN03_03112, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-50

87.7

Show/hide

Query:  RSRGHHMTCPSGHSKVIKRTSYDITSKAGYNESAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTST
        R R  +  CPSGHSK I+R      SKAGYN+SAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTST
Subjt:  RSRGHHMTCPSGHSKVIKRTSYDITSKAGYNESAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTST

Query:  SSSVIRSFEPLPPPVNDVANLP
        SSSVIRSFEPLPPPVNDVANLP
Subjt:  SSSVIRSFEPLPPPVNDVANLP

KAG7016815.1 hypothetical protein SDJN02_21926, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.4e-42

93.81

Show/hide

Query:  SKAGYNESAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP
        SKAG NESAIAMENQS+ CLSYEKLNGVATW+GTSVASAFFASLE CSCINLSTSDDHEDPDEAHDRPLMYCTSTSSS+IRSFEPLPPPVNDVANLP
Subjt:  SKAGYNESAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP

KAG7035759.1 hypothetical protein SDJN02_02557, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.3e-47

93.4

Show/hide

Query:  IKRTSYDITSKAGYNESAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVN
        +KR    I SKAGYN+SAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVN
Subjt:  IKRTSYDITSKAGYNESAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVN

Query:  DVANLP
        DVANLP
Subjt:  DVANLP

XP_022958087.1 uncharacterized protein LOC111459420 [Cucurbita moschata]

7.9e-41

100

Show/hide

Query:  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP
        MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP
Subjt:  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP

XP_022995453.1 uncharacterized protein LOC111490985 [Cucurbita maxima]

1.1e-39

98.84

Show/hide

Query:  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP
        MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHED DEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP
Subjt:  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLU3 Uncharacterized protein

8.8e-38

94.19

Show/hide

Query:  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP
        MENQS+ CLSYEKLNG+ATW+GTSVASAFFASLERCSCINLSTSDDHEDP+EAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP
Subjt:  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP

A0A1S3AU63 uncharacterized protein LOC103482984

1.1e-37

84.62

Show/hide

Query:  ITSKAG----YNESAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSS-VIRSFEPLPPPVNDV
        I SKAG      +S I MENQS+ CLSYEKLNG+ATW+GTSVASAFFASLERCSCINLSTSDDHEDP+EAHDRPLMYCTSTSSS VIRSFEPLPPPVNDV
Subjt:  ITSKAG----YNESAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSS-VIRSFEPLPPPVNDV

Query:  ANLP
        ANLP
Subjt:  ANLP

A0A6J1E5Z9 uncharacterized protein LOC111430272

6.7e-38

95.35

Show/hide

Query:  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP
        MENQS+ CLSYEKLNGVATW+GTSVASAFFASLE CSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP
Subjt:  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP

A0A6J1H0Y4 uncharacterized protein LOC111459420

3.8e-41

100

Show/hide

Query:  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP
        MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP
Subjt:  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP

A0A6J1K418 uncharacterized protein LOC111490985

5.5e-40

98.84

Show/hide

Query:  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP
        MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHED DEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP
Subjt:  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G10810.1 unknown protein

1.9e-13

53.62

Show/hide

Query:  SKAGYNESAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPL
        + +  N +A    N S+A  S EKL+  A+W+ T+V SAFFASLERCSC+NLSTSDD ++ +E+H+RPL
Subjt:  SKAGYNESAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPL

AT4G24026.1 unknown protein

2.4e-11

49.23

Show/hide

Query:  ESAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTS--DDHEDPDEAHDRPL
        + +I++ +  S   S EK++  A+W+  +V SAFF SLERC+C+NLSTS  DD +D DE+H RPL
Subjt:  ESAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTS--DDHEDPDEAHDRPL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGCGATCAAGAGGACATCATATGACATGTCCATCTGGCCACTCGAAAGTCATCAAGAGGACATCATATGACATAACATCCAAGGCAGGTTACAACGAATCC
GCCATAGCCATGGAGAATCAGAGCAGCGCCTGTCTGTCCTACGAGAAGCTTAACGGCGTCGCCACCTGGCTCGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCT
CTCGAGCGCTGTTCCTGCATCAATCTCTCAACCTCCGACGACCATGAAGATCCCGATGAGGCTCACGATCGCCCTCTCATGTACTGCACTTCCACTTCTTCCTCC
GTCATTCGCAGCTTCGAACCGCTTCCTCCGCCGGTCAATGACGTTGCCAATCTCCCCAGCAGGAACATGGGCACACACAGCTTGGTTAACATAAAGCTTTCACAG
AAAAGGCAGAAGAACATTCAATGTAGAAAGAATATTTGGATCAGCCTGGAAGGTAAAGTCTCATCAGATGAAAACGACCGACTTTGTTGCCCCACACTCAAATCC
TCATGTCACTCGTCGTCATCGTCGTCATCGTCGTCTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKRSRGHHMTCPSGHSKVIKRTSYDITSKAGYNESAIAMENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSS
VIRSFEPLPPPVNDVANLPSRNMGTHSLVNIKLSQKRQKNIQCRKNIWISLEGKVSSDENDRLCCPTLKSSCHSSSSSSSSS

CmoCh02G011600 (gene) of Cucurbita moschata (Rifu) v1 genome