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CmoCh02G011800 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G011800
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRRM domain-containing protein
Genome locationCmo_Chr02:7079412..7082011
RNA-Seq ExpressionCmoCh02G011800
SyntenyCmoCh02G011800
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8042803.1 hypothetical protein BT93_A1205 [Corymbia citriodora subsp. variegata]1.1e-0583.87Show/hide
Query:  MTSAWTNMSIAIIHRDIEREWENPCGVMGIF
        MTSAWTNMS A+IHRD+EREWEN  GVMGIF
Subjt:  MTSAWTNMSIAIIHRDIEREWENPCGVMGIF

KAG6605812.1 Serine/arginine-rich splicing factor SR34A, partial [Cucurbita argyrosperma subsp. sororia]7.1e-1359.77Show/hide
Query:  ITSFSLAPVAVACYPPPRPNPKPFVINSGRCRRISSTKAKRQFFFE---SRFQVLVQSSVSQSLMTSAWTNMSIAIIHRDIEREWEN
        +T   LAPVAVACYP PRPNPKPFVINSGRCRRISST+ KRQFFFE   SR      S V Q    S W N+S A    ++E E E+
Subjt:  ITSFSLAPVAVACYPPPRPNPKPFVINSGRCRRISSTKAKRQFFFE---SRFQVLVQSSVSQSLMTSAWTNMSIAIIHRDIEREWEN

KGN49818.1 hypothetical protein Csa_000599 [Cucumis sativus]1.4e-0587.5Show/hide
Query:  MTSAWTNMSIAIIHRDIEREWENPCGVMGIFF
        MTSA TNMSIAIIHRDIEREWE+ CGVMGI F
Subjt:  MTSAWTNMSIAIIHRDIEREWENPCGVMGIFF

PON71975.1 hypothetical protein PanWU01x14_068170, partial [Parasponia andersonii]7.4e-1069.81Show/hide
Query:  SQSLMTSAWTNMSIAIIHRDIEREWENPCGVMG-IFFKMEMLDHSQKSYALLK
        S S MTSAWTNMSIA+IHRDIER+WE  CGVMG IF  +E+L HSQK Y   K
Subjt:  SQSLMTSAWTNMSIAIIHRDIEREWENPCGVMG-IFFKMEMLDHSQKSYALLK

PON83659.1 hypothetical protein TorRG33x02_204650, partial [Trema orientale]3.7e-0967.92Show/hide
Query:  SQSLMTSAWTNMSIAIIHRDIEREWENPCGVMG-IFFKMEMLDHSQKSYALLK
        S S M SAWTNMSIA+IHRDIER+WE  CGVMG IF  +E+L HSQK Y   K
Subjt:  SQSLMTSAWTNMSIAIIHRDIEREWENPCGVMG-IFFKMEMLDHSQKSYALLK

TrEMBL top hitse value%identityAlignment
A0A059DF44 Uncharacterized protein (Fragment)3.5e-0571.05Show/hide
Query:  SSVSQSLMTSAWTNMSIAIIHRDIEREWENPCGVMGIF
        S  S   MTSAWTNMS A+I RD+EREWEN  GVMGIF
Subjt:  SSVSQSLMTSAWTNMSIAIIHRDIEREWENPCGVMGIF

A0A0A0KJQ0 Uncharacterized protein7.0e-0687.5Show/hide
Query:  MTSAWTNMSIAIIHRDIEREWENPCGVMGIFF
        MTSA TNMSIAIIHRDIEREWE+ CGVMGI F
Subjt:  MTSAWTNMSIAIIHRDIEREWENPCGVMGIFF

A0A2P5DF99 Uncharacterized protein (Fragment)3.6e-1069.81Show/hide
Query:  SQSLMTSAWTNMSIAIIHRDIEREWENPCGVMG-IFFKMEMLDHSQKSYALLK
        S S MTSAWTNMSIA+IHRDIER+WE  CGVMG IF  +E+L HSQK Y   K
Subjt:  SQSLMTSAWTNMSIAIIHRDIEREWENPCGVMG-IFFKMEMLDHSQKSYALLK

A0A2P5EDP3 Uncharacterized protein (Fragment)1.8e-0967.92Show/hide
Query:  SQSLMTSAWTNMSIAIIHRDIEREWENPCGVMG-IFFKMEMLDHSQKSYALLK
        S S M SAWTNMSIA+IHRDIER+WE  CGVMG IF  +E+L HSQK Y   K
Subjt:  SQSLMTSAWTNMSIAIIHRDIEREWENPCGVMG-IFFKMEMLDHSQKSYALLK

A0A7J6EDU1 RRM domain-containing protein8.5e-0480Show/hide
Query:  MTSAWTNMSIAIIHRDIEREWENPCGVMGI
        MTSAWTNMSIAIIHR IER+ E  CGVMG+
Subjt:  MTSAWTNMSIAIIHRDIEREWENPCGVMGI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAATAATAATAAACTGGTCTGCTTTGTCTGCTCATCAAAAAAGATGTTAAGTTTTGGTTGCAAGATTTGTTTATTTCCTATAATCGCGTATTTGGAAATTACCTC
CTTCAGTCTCGCGCCTGTGGCTGTGGCATGTTATCCTCCGCCACGACCTAACCCTAAACCCTTCGTCATCAATTCCGGTCGCTGCAGGAGGATCTCCAGCACGAAAGCCA
AGCGCCAGTTCTTCTTTGAGTCGCGGTTCCAGGTTTTGGTGCAGTCGTCAGTTTCCCAGTCTTTGATGACAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGG
GATATAGAAAGGGAATGGGAGAATCCTTGTGGAGTTATGGGTATTTTTTTTAAAATGGAGATGCTTGATCACTCTCAGAAAAGCTATGCACTGCTAAAATTCTGGAGAGG
ATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAATAATAATAAACTGGTCTGCTTTGTCTGCTCATCAAAAAAGATGTTAAGTTTTGGTTGCAAGATTTGTTTATTTCCTATAATCGCGTATTTGGAAATTACCTC
CTTCAGTCTCGCGCCTGTGGCTGTGGCATGTTATCCTCCGCCACGACCTAACCCTAAACCCTTCGTCATCAATTCCGGTCGCTGCAGGAGGATCTCCAGCACGAAAGCCA
AGCGCCAGTTCTTCTTTGAGTCGCGGTTCCAGGTTTTGGTGCAGTCGTCAGTTTCCCAGTCTTTGATGACAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGG
GATATAGAAAGGGAATGGGAGAATCCTTGTGGAGTTATGGGTATTTTTTTTAAAATGGAGATGCTTGATCACTCTCAGAAAAGCTATGCACTGCTAAAATTCTGGAGAGG
ATGA
Protein sequenceShow/hide protein sequence
MDNNNKLVCFVCSSKKMLSFGCKICLFPIIAYLEITSFSLAPVAVACYPPPRPNPKPFVINSGRCRRISSTKAKRQFFFESRFQVLVQSSVSQSLMTSAWTNMSIAIIHR
DIEREWENPCGVMGIFFKMEMLDHSQKSYALLKFWRG