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CmoCh02G012940 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G012940
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC110412324
Genome locationCmo_Chr02:7700000..7701391
RNA-Seq ExpressionCmoCh02G012940
SyntenyCmoCh02G012940
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605919.1 hypothetical protein SDJN03_03236, partial [Cucurbita argyrosperma subsp. sororia]3.5e-86100Show/hide
Query:  MRLWLISSSQMLSLHSLFNQNHRPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG
        MRLWLISSSQMLSLHSLFNQNHRPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG
Subjt:  MRLWLISSSQMLSLHSLFNQNHRPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG

Query:  TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSL
        TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSL
Subjt:  TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSL

KAG7035867.1 hypothetical protein SDJN02_02666 [Cucurbita argyrosperma subsp. argyrosperma]3.1e-90100Show/hide
Query:  MRLWLISSSQMLSLHSLFNQNHRPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG
        MRLWLISSSQMLSLHSLFNQNHRPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG
Subjt:  MRLWLISSSQMLSLHSLFNQNHRPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG

Query:  TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSLFISPSLLT
        TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSLFISPSLLT
Subjt:  TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSLFISPSLLT

XP_022996085.1 uncharacterized protein LOC111491401 [Cucurbita maxima]2.7e-8696.15Show/hide
Query:  MRLWLISSSQMLSLHSLFNQNHRPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG
        MRLWLISSSQMLSLHSL NQNHRPPLLATKKSSD LKTKKAHP P PASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG
Subjt:  MRLWLISSSQMLSLHSLFNQNHRPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG

Query:  TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSLFISPSLLT
        TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSS SSETQ+TEPPVLQLLPPSSLFISPSLL+
Subjt:  TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSLFISPSLLT

XP_023533692.1 uncharacterized protein LOC111795475 [Cucurbita pepo subsp. pepo]3.0e-8595.6Show/hide
Query:  MRLWLISSSQMLSLHSLFNQNHRPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG
        MRLWLISSSQMLSLHSL NQNHRPPLLATKKSS  LKTKK+HP P PASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPK KVVEG
Subjt:  MRLWLISSSQMLSLHSLFNQNHRPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG

Query:  TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSLFISPSLLT
        TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPS ISSETQSTEPPVLQLLPPSSLFISPSLLT
Subjt:  TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSLFISPSLLT

XP_038901592.1 uncharacterized protein LOC120088397 [Benincasa hispida]1.1e-6075.14Show/hide
Query:  MRLWLISSSQMLSLHSLFNQNHRPPLLATKK-SSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVE
        MR WLI SSQMLSL SLFNQN RPPL+ATKK S D L+ +  HP  + ASR CI+C++ETDSQQFEVDPDKARQALQELDQQL+SFSKK+ T PKKK V+
Subjt:  MRLWLISSSQMLSLHSLFNQNHRPPLLATKK-SSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVE

Query:  GTKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISS--ETQSTEPPVLQLLPPSSLFISPSLLT
          KLPR QMRGEM E++ + LANSAVVLFIFSIFYNVLFY VIKPSID PLPSSISS  E +STEPPVLQ LP SS+FISPSLL+
Subjt:  GTKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISS--ETQSTEPPVLQLLPPSSLFISPSLLT

TrEMBL top hitse value%identityAlignment
A0A0A0KH36 Uncharacterized protein2.6e-5573.14Show/hide
Query:  MLSLHSLFNQNHRPPLLATKKSSD-ALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRDQMR
        MLSL SLFNQN RPP + TKK SD  LK +K HPL + AS   I+C+KE+DSQQFEVDPDKARQALQELDQQLQSFSKK+ + PKKKVV+   +PR QMR
Subjt:  MLSLHSLFNQNHRPPLLATKKSSD-ALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRDQMR

Query:  GEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISS--ETQSTEPPVLQLLPPSSLFISPSLLT
        GEM E+SE+ LANSAVVLFIFSIFYNVLFY VIKPSID PLPSSISS  E +ST+P VLQ LP SS+ ISPSLL+
Subjt:  GEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISS--ETQSTEPPVLQLLPPSSLFISPSLLT

A0A1S3BNA1 uncharacterized protein LOC1034915051.9e-5371.43Show/hide
Query:  MLSLHSLFNQNHRPPLLATKKSSD-ALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRDQMR
        MLSL S FNQN RPP +ATKK SD  LK +K HP  + AS   I+C++E+DSQQFEVDPDKARQALQELDQQLQSFSKK+ + PKKKVV+   LPR QMR
Subjt:  MLSLHSLFNQNHRPPLLATKKSSD-ALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRDQMR

Query:  GEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISS--ETQSTEPPVLQLLPPSSLFISPSLLT
        GEM E+  + LANSAVVLFIFSIFYNVLFY VIKPSID PLPSSISS  E +ST P VLQ LP SS+ ISPSLL+
Subjt:  GEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISS--ETQSTEPPVLQLLPPSSLFISPSLLT

A0A5D3BB07 Uncharacterized protein1.9e-5371.43Show/hide
Query:  MLSLHSLFNQNHRPPLLATKKSSD-ALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRDQMR
        MLSL S FNQN RPP +ATKK SD  LK +K HP  + AS   I+C++E+DSQQFEVDPDKARQALQELDQQLQSFSKK+ + PKKKVV+   LPR QMR
Subjt:  MLSLHSLFNQNHRPPLLATKKSSD-ALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRDQMR

Query:  GEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISS--ETQSTEPPVLQLLPPSSLFISPSLLT
        GEM E+  + LANSAVVLFIFSIFYNVLFY VIKPSID PLPSSISS  E +ST P VLQ LP SS+ ISPSLL+
Subjt:  GEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISS--ETQSTEPPVLQLLPPSSLFISPSLLT

A0A6J1D5V3 uncharacterized protein LOC1110173183.0e-5169.32Show/hide
Query:  MLSLHSLFNQNH----RPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRD
        MLSLHSLFNQN      PPL ATKK    L+ +  HP P  A+R CIVC++E DSQQFE+DPDKARQALQELDQQLQSFSKK+ TPPK K  +  KLPR+
Subjt:  MLSLHSLFNQNH----RPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRD

Query:  QMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSLFISPSLLT
        Q+RGEM+E+S S LANSAV LFIFSI YNVLFY VIKPSID PL SSISSE + TEPPVLQ LP SS FI  S L+
Subjt:  QMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSLFISPSLLT

A0A6J1K5Q9 uncharacterized protein LOC1114914011.3e-8696.15Show/hide
Query:  MRLWLISSSQMLSLHSLFNQNHRPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG
        MRLWLISSSQMLSLHSL NQNHRPPLLATKKSSD LKTKKAHP P PASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG
Subjt:  MRLWLISSSQMLSLHSLFNQNHRPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEG

Query:  TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSLFISPSLLT
        TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSS SSETQ+TEPPVLQLLPPSSLFISPSLL+
Subjt:  TKLPRDQMRGEMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSLFISPSLLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01870.1 unknown protein2.0e-1039.13Show/hide
Query:  LKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRDQ-MRGEMAELSESFLANSAVVLFIFSIFY
        ++TKK   L      R +  ++  DS  F++D DKAR+AL++LDQQ++S + ++     K   +  +   D  M  E  E+S SFL +SA VL   ++FY
Subjt:  LKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRDQ-MRGEMAELSESFLANSAVVLFIFSIFY

Query:  NVLFYAVIKPSIDTP
        N+LF  VIKPS+D P
Subjt:  NVLFYAVIKPSIDTP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGCTGTGGTTAATCAGCAGCTCTCAGATGCTTTCCCTTCACTCCCTCTTCAATCAAAACCATCGCCCGCCATTGTTAGCCACCAAGAAAAGCTCCGATGCTTTGAA
GACAAAGAAAGCTCACCCACTTCCTTTCCCTGCTTCTCGTCGCTGTATTGTGTGTTCAAAGGAGACCGACTCACAGCAGTTCGAGGTCGACCCAGACAAGGCCAGGCAGG
CCCTTCAAGAGCTCGACCAGCAGCTTCAATCCTTCTCCAAAAAACGAGCCACCCCTCCCAAGAAGAAAGTTGTTGAAGGCACAAAGCTTCCAAGAGATCAAATGAGAGGA
GAAATGGCAGAACTTTCAGAGTCCTTTTTAGCAAACTCTGCTGTTGTTCTCTTCATCTTCTCCATTTTCTACAATGTGCTGTTCTATGCAGTCATAAAGCCCTCCATTGA
TACTCCACTGCCAAGCTCAATCAGCTCTGAGACACAATCCACTGAGCCACCAGTCTTGCAGCTGCTACCACCTTCATCTCTGTTCATATCCCCCTCACTTCTTACCTAA
mRNA sequenceShow/hide mRNA sequence
AATAGTTCTTGAGCTTCTTCTAGGTAATGAAATAACATTATCCTGAAAGCGTTCCGATGCGGCTGTGGTTAATCAGCAGCTCTCAGATGCTTTCCCTTCACTCCCTCTTC
AATCAAAACCATCGCCCGCCATTGTTAGCCACCAAGAAAAGCTCCGATGCTTTGAAGACAAAGAAAGCTCACCCACTTCCTTTCCCTGCTTCTCGTCGCTGTATTGTGTG
TTCAAAGGAGACCGACTCACAGCAGTTCGAGGTCGACCCAGACAAGGCCAGGCAGGCCCTTCAAGAGCTCGACCAGCAGCTTCAATCCTTCTCCAAAAAACGAGCCACCC
CTCCCAAGAAGAAAGTTGTTGAAGGCACAAAGCTTCCAAGAGATCAAATGAGAGGAGAAATGGCAGAACTTTCAGAGTCCTTTTTAGCAAACTCTGCTGTTGTTCTCTTC
ATCTTCTCCATTTTCTACAATGTGCTGTTCTATGCAGTCATAAAGCCCTCCATTGATACTCCACTGCCAAGCTCAATCAGCTCTGAGACACAATCCACTGAGCCACCAGT
CTTGCAGCTGCTACCACCTTCATCTCTGTTCATATCCCCCTCACTTCTTACCTAA
Protein sequenceShow/hide protein sequence
MRLWLISSSQMLSLHSLFNQNHRPPLLATKKSSDALKTKKAHPLPFPASRRCIVCSKETDSQQFEVDPDKARQALQELDQQLQSFSKKRATPPKKKVVEGTKLPRDQMRG
EMAELSESFLANSAVVLFIFSIFYNVLFYAVIKPSIDTPLPSSISSETQSTEPPVLQLLPPSSLFISPSLLT