; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh02G013180 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G013180
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein CLT1, chloroplastic
Genome locationCmo_Chr02:7830224..7830872
RNA-Seq ExpressionCmoCh02G013180
SyntenyCmoCh02G013180
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR013936 - Chloroquine-resistance transporter-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022958183.1 protein CLT1, chloroplastic [Cucurbita moschata]2.5e-80100Show/hide
Query:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
        MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
Subjt:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG

Query:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
        EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
Subjt:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

XP_022995084.1 protein CLT1, chloroplastic isoform X1 [Cucurbita maxima]5.7e-8098.74Show/hide
Query:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
        MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGC+VLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
Subjt:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG

Query:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
        EILEKIRAEKLRRSNRTVEIVIAAVLTV+FGVANRVLYKLALIPLKHYPFFLAQLATFG
Subjt:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

XP_022995085.1 protein CLT1, chloroplastic isoform X2 [Cucurbita maxima]5.7e-8098.74Show/hide
Query:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
        MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGC+VLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
Subjt:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG

Query:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
        EILEKIRAEKLRRSNRTVEIVIAAVLTV+FGVANRVLYKLALIPLKHYPFFLAQLATFG
Subjt:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

XP_023533653.1 protein CLT1, chloroplastic [Cucurbita pepo subsp. pepo]2.8e-7998.11Show/hide
Query:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
        MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGC+VLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
Subjt:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG

Query:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
        EILEKIRAEKLRRSNR VEIVIAAVLTV+FGVANRVLYKLALIPLKHYPFFLAQLATFG
Subjt:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

XP_038901870.1 protein CLT1, chloroplastic isoform X2 [Benincasa hispida]2.3e-6583.02Show/hide
Query:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
        M+SW+RRFSA   SFG  FRLRQQPRSLAEVSHL IYR   LRSGCGC++LRAPKHRRL+A  PS AWDRS+S EEDRVKPCSYAVG QRVEDLA+ NSG
Subjt:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG

Query:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
        EIL+ IRAEKLRRSNRTVEIV+AA LTV+FGVANRVLYKLALIPLKHYPFFLAQLATFG
Subjt:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

TrEMBL top hitse value%identityAlignment
A0A1S3BMI5 protein CLT1, chloroplastic2.3e-6381.13Show/hide
Query:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
        MTSW+ RFS G  SFG  FRLR+QPRSL E   +SIYR A LRSGCGC++LRAPKHRRL+A  PS AWD S+SGEEDRVKPCSYAVG QRVEDLAEGNSG
Subjt:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG

Query:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
        EILE IRAEKLRRSNR VEIV+AA LTV+FGVANRVLYKLAL+PLKHYPFFLAQLATFG
Subjt:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

A0A5D3BD09 Protein CLT12.3e-6381.13Show/hide
Query:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
        MTSW+ RFS G  SFG  FRLR+QPRSL E   +SIYR A LRSGCGC++LRAPKHRRL+A  PS AWD S+SGEEDRVKPCSYAVG QRVEDLAEGNSG
Subjt:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG

Query:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
        EILE IRAEKLRRSNR VEIV+AA LTV+FGVANRVLYKLAL+PLKHYPFFLAQLATFG
Subjt:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

A0A6J1H2F5 protein CLT1, chloroplastic1.2e-80100Show/hide
Query:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
        MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
Subjt:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG

Query:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
        EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
Subjt:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

A0A6J1K352 protein CLT1, chloroplastic isoform X22.7e-8098.74Show/hide
Query:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
        MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGC+VLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
Subjt:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG

Query:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
        EILEKIRAEKLRRSNRTVEIVIAAVLTV+FGVANRVLYKLALIPLKHYPFFLAQLATFG
Subjt:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

A0A6J1K4P6 protein CLT1, chloroplastic isoform X12.7e-8098.74Show/hide
Query:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
        MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGC+VLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG
Subjt:  MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSG

Query:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
        EILEKIRAEKLRRSNRTVEIVIAAVLTV+FGVANRVLYKLALIPLKHYPFFLAQLATFG
Subjt:  EILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

SwissProt top hitse value%identityAlignment
A1L4X0 Protein CLT2, chloroplastic5.1e-0765.22Show/hide
Query:  SNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
        SNR + IV  +V+ V   VANRVLYKLAL+P+K YPFF+AQL TFG
Subjt:  SNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

Q058P6 Protein CLT1, chloroplastic8.7e-1545.45Show/hide
Query:  SGCGCIVLRAPKHRRL---QAAEPSAAWDRSESGEEDRVK--PCSYAVGGQRVEDLAEGNSGEILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLY
        +G   IVLR+ +  RL   +A  P+ +W+ S  G+ED  K    +YA+GG     +A                 + +RT+EIVIAA  T   GV NRVLY
Subjt:  SGCGCIVLRAPKHRRL---QAAEPSAAWDRSESGEEDRVK--PCSYAVGGQRVEDLAEGNSGEILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLY

Query:  KLALIPLKHYPFFLAQLATFG
        KLALIPLK YPFFLAQL+TFG
Subjt:  KLALIPLKHYPFFLAQLATFG

Q8RWL5 Protein CLT3, chloroplastic2.8e-1337.35Show/hide
Query:  MTSWTRRFSAG--ADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRR--LQAAEPSAAWDRSESGEEDRVK---PCSYAVGGQRVED
        M + +RRF+ G  A    V      +P+S++ +    I            + L  P  RR  +QAA    +WD  + G E  +K      YA+G   +  
Subjt:  MTSWTRRFSAG--ADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRR--LQAAEPSAAWDRSESGEEDRVK---PCSYAVGGQRVED

Query:  LAEGNSGEILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
          EG+S   +  I  E +    +T EIVI A +T  FGV NRV+YKLAL+PLK YPFFLAQL+TFG
Subjt:  LAEGNSGEILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

Arabidopsis top hitse value%identityAlignment
AT4G24460.1 CRT (chloroquine-resistance transporter)-like transporter 23.6e-0865.22Show/hide
Query:  SNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
        SNR + IV  +V+ V   VANRVLYKLAL+P+K YPFF+AQL TFG
Subjt:  SNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

AT4G24460.2 CRT (chloroquine-resistance transporter)-like transporter 23.6e-0865.22Show/hide
Query:  SNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
        SNR + IV  +V+ V   VANRVLYKLAL+P+K YPFF+AQL TFG
Subjt:  SNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

AT5G12170.2 CRT (chloroquine-resistance transporter)-like transporter 32.0e-1437.35Show/hide
Query:  MTSWTRRFSAG--ADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRR--LQAAEPSAAWDRSESGEEDRVK---PCSYAVGGQRVED
        M + +RRF+ G  A    V      +P+S++ +    I            + L  P  RR  +QAA    +WD  + G E  +K      YA+G   +  
Subjt:  MTSWTRRFSAG--ADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRR--LQAAEPSAAWDRSESGEEDRVK---PCSYAVGGQRVED

Query:  LAEGNSGEILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG
          EG+S   +  I  E +    +T EIVI A +T  FGV NRV+YKLAL+PLK YPFFLAQL+TFG
Subjt:  LAEGNSGEILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFG

AT5G19380.1 CRT (chloroquine-resistance transporter)-like transporter 16.2e-1645.45Show/hide
Query:  SGCGCIVLRAPKHRRL---QAAEPSAAWDRSESGEEDRVK--PCSYAVGGQRVEDLAEGNSGEILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLY
        +G   IVLR+ +  RL   +A  P+ +W+ S  G+ED  K    +YA+GG     +A                 + +RT+EIVIAA  T   GV NRVLY
Subjt:  SGCGCIVLRAPKHRRL---QAAEPSAAWDRSESGEEDRVK--PCSYAVGGQRVEDLAEGNSGEILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLY

Query:  KLALIPLKHYPFFLAQLATFG
        KLALIPLK YPFFLAQL+TFG
Subjt:  KLALIPLKHYPFFLAQLATFG

AT5G19380.2 CRT (chloroquine-resistance transporter)-like transporter 16.2e-1645.45Show/hide
Query:  SGCGCIVLRAPKHRRL---QAAEPSAAWDRSESGEEDRVK--PCSYAVGGQRVEDLAEGNSGEILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLY
        +G   IVLR+ +  RL   +A  P+ +W+ S  G+ED  K    +YA+GG     +A                 + +RT+EIVIAA  T   GV NRVLY
Subjt:  SGCGCIVLRAPKHRRL---QAAEPSAAWDRSESGEEDRVK--PCSYAVGGQRVEDLAEGNSGEILEKIRAEKLRRSNRTVEIVIAAVLTVLFGVANRVLY

Query:  KLALIPLKHYPFFLAQLATFG
        KLALIPLK YPFFLAQL+TFG
Subjt:  KLALIPLKHYPFFLAQLATFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCATGGACCCGCCGGTTCTCCGCCGGCGCCGACTCATTCGGCGTTTCATTTCGATTACGGCAACAACCGCGAAGCTTGGCTGAGGTTTCTCACCTCAGCATTTA
CAGGTACGCTGGTTTACGATCTGGTTGCGGATGTATAGTTCTACGGGCGCCGAAGCACCGGCGGCTACAGGCGGCGGAGCCGTCGGCAGCGTGGGATCGATCGGAGAGTG
GAGAGGAGGATAGGGTGAAGCCTTGTTCGTACGCAGTGGGAGGGCAGAGGGTGGAGGATTTGGCGGAGGGGAATAGCGGCGAGATCTTGGAGAAAATTAGGGCGGAGAAA
TTGAGGAGAAGTAATCGGACGGTGGAGATTGTGATTGCAGCCGTGTTAACGGTGCTTTTCGGTGTGGCCAATCGGGTGCTGTACAAGCTTGCTTTGATTCCCCTGAAGCA
CTATCCGTTCTTCCTCGCACAGCTCGCCACTTTCGGTACCACCTAA
mRNA sequenceShow/hide mRNA sequence
ATTGAAGGGAGGAACGCGGGGGCATCGTCCAGAGACTATTAAGTCCCGAAGGACGAGAACTGAAACTCGTCTCCTTCTCTTCGAATTTTCCGGCCATAAATTCATCACAT
ATTGTATTATGACATCATGGACCCGCCGGTTCTCCGCCGGCGCCGACTCATTCGGCGTTTCATTTCGATTACGGCAACAACCGCGAAGCTTGGCTGAGGTTTCTCACCTC
AGCATTTACAGGTACGCTGGTTTACGATCTGGTTGCGGATGTATAGTTCTACGGGCGCCGAAGCACCGGCGGCTACAGGCGGCGGAGCCGTCGGCAGCGTGGGATCGATC
GGAGAGTGGAGAGGAGGATAGGGTGAAGCCTTGTTCGTACGCAGTGGGAGGGCAGAGGGTGGAGGATTTGGCGGAGGGGAATAGCGGCGAGATCTTGGAGAAAATTAGGG
CGGAGAAATTGAGGAGAAGTAATCGGACGGTGGAGATTGTGATTGCAGCCGTGTTAACGGTGCTTTTCGGTGTGGCCAATCGGGTGCTGTACAAGCTTGCTTTGATTCCC
CTGAAGCACTATCCGTTCTTCCTCGCACAGCTCGCCACTTTCGGTACCACCTAA
Protein sequenceShow/hide protein sequence
MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCIVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSGEILEKIRAEK
LRRSNRTVEIVIAAVLTVLFGVANRVLYKLALIPLKHYPFFLAQLATFGTT