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CmoCh02G013250 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G013250
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationCmo_Chr02:7866337..7867683
RNA-Seq ExpressionCmoCh02G013250
SyntenyCmoCh02G013250
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605945.1 hypothetical protein SDJN03_03262, partial [Cucurbita argyrosperma subsp. sororia]8.4e-6398.41Show/hide
Query:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRL
        MDTR EKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSH+SHHSRYEHHPQYQHRL
Subjt:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRL

Query:  RPHQHDPVVPQKKKKILTYINCCIRP
        RPHQHDPVVPQKKKKILTYINCCIRP
Subjt:  RPHQHDPVVPQKKKKILTYINCCIRP

XP_022985819.1 dendritic arbor reduction protein 1 isoform X1 [Cucurbita maxima]1.7e-3166.67Show/hide
Query:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRL
        MD+R E  NRWKSVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKRASLGNE+E+MA+ADKH R   HHH R H H  HH R  HHP   H  
Subjt:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRL

Query:  RPHQHDPVVPQKKKKILTYINCCIRP
        +      VV QKKKKIL+ ++CCI+P
Subjt:  RPHQHDPVVPQKKKKILTYINCCIRP

XP_022985820.1 dendritic arbor reduction protein 1 isoform X2 [Cucurbita maxima]8.5e-3166.67Show/hide
Query:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRL
        MD+R E  NRWKSVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKRASLGNE+E+MA+ADKH R   HHH R H H  HH R  HHP   H  
Subjt:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRL

Query:  RPHQHDPVVPQKKKKILTYINCCIRP
         P   D  V  KKKKIL+ ++CCI+P
Subjt:  RPHQHDPVVPQKKKKILTYINCCIRP

XP_038901151.1 lateral signaling target protein 2 homolog isoform X1 [Benincasa hispida]5.5e-3871.09Show/hide
Query:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHH--SHHSRYEHHPQYQH
        M  R EK NRW+SVPEFGGWDHNAPGASNYSVVF+QARA+RKQ+KTDLTEFKR SLGNERE+MA   K  R Q HHHHRHH HH   H  +++H   + H
Subjt:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHH--SHHSRYEHHPQYQH

Query:  RLRPHQHDPVVPQKKKKILTYINCCIRP
        R +P   D VVPQKKKKILTYINCCIRP
Subjt:  RLRPHQHDPVVPQKKKKILTYINCCIRP

XP_038901152.1 lateral signaling target protein 2 homolog isoform X2 [Benincasa hispida]5.1e-3670.31Show/hide
Query:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHH--SHHSRYEHHPQYQH
        M  R EK NRW+SVPEFGGWDHNAPGASNYSVVF+QARA+RKQ+KTDLTEFKR SLGNERE+MA   K  R Q HHHHRHH HH   H  +++H   + H
Subjt:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHH--SHHSRYEHHPQYQH

Query:  RLRPHQHDPVVPQKKKKILTYINCCIRP
        R +P   D VVP KKKKILTYINCCIRP
Subjt:  RLRPHQHDPVVPQKKKKILTYINCCIRP

TrEMBL top hitse value%identityAlignment
A0A0A0KK09 AvrRpt-cleavage domain-containing protein6.5e-3765.89Show/hide
Query:  EKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRLRPHQH
        ++NNRW+SVPEFGGWDHNAPGASNYSVVF+QARA+RKQQKTDLTEFK+ SLGNE+E+M   DKH R Q H HHRH   H HH  ++H   ++H+   HQH
Subjt:  EKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRLRPHQH

Query:  --------DPVVPQKKKKILTYINCCIRP
                D V P+KKKKILTYINCCIRP
Subjt:  --------DPVVPQKKKKILTYINCCIRP

A0A6J1FT95 dendritic arbor reduction protein 1 isoform X11.0e-2965.35Show/hide
Query:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRH-HSHHSHHSRYEHHPQYQHR
        MD+R E  NRWKSVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKRASLGNE+E+MA+ADKH R   HH HRH H H   H    HHP   H 
Subjt:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRH-HSHHSHHSRYEHHPQYQHR

Query:  LRPHQHDPVVPQKKKKILTYINCCIRP
         +      VV QKKKKIL+ ++CCI+P
Subjt:  LRPHQHDPVVPQKKKKILTYINCCIRP

A0A6J1FX29 dendritic arbor reduction protein 1 isoform X26.6e-2963.85Show/hide
Query:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRH-HSHHSHHSRYEHHPQYQHR
        MD+R E  NRWKSVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKRASLGNE+E+MA+ADKH R   HH HRH H H   H    HHP     
Subjt:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRH-HSHHSHHSRYEHHPQYQHR

Query:  LRPHQHDPV---VPQKKKKILTYINCCIRP
           H   PV   V  KKKKIL+ ++CCI+P
Subjt:  LRPHQHDPV---VPQKKKKILTYINCCIRP

A0A6J1JCC4 dendritic arbor reduction protein 1 isoform X24.1e-3166.67Show/hide
Query:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRL
        MD+R E  NRWKSVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKRASLGNE+E+MA+ADKH R   HHH R H H  HH R  HHP   H  
Subjt:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRL

Query:  RPHQHDPVVPQKKKKILTYINCCIRP
         P   D  V  KKKKIL+ ++CCI+P
Subjt:  RPHQHDPVVPQKKKKILTYINCCIRP

A0A6J1JEB9 dendritic arbor reduction protein 1 isoform X18.3e-3266.67Show/hide
Query:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRL
        MD+R E  NRWKSVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKRASLGNE+E+MA+ADKH R   HHH R H H  HH R  HHP   H  
Subjt:  MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRL

Query:  RPHQHDPVVPQKKKKILTYINCCIRP
        +      VV QKKKKIL+ ++CCI+P
Subjt:  RPHQHDPVVPQKKKKILTYINCCIRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G09960.1 FUNCTIONS IN: molecular_function unknown2.6e-0633.85Show/hide
Query:  DTRVEKNNRWKSVPEFGGWDHNAPGA-SNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMM-----AMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQ
        D R EKN  W SVP+FG WD    G   +YS+ F++ R  RKQ K D +   RASLGNE E++     A +   L      + R  S  SHH        
Subjt:  DTRVEKNNRWKSVPEFGGWDHNAPGA-SNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMM-----AMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQ

Query:  YQHRLRPHQHDPVVPQKKKKILTYINCCIR
                 H P  P  ++ + +  NCC++
Subjt:  YQHRLRPHQHDPVVPQKKKKILTYINCCIR

AT5G19473.1 RPM1-interacting protein 4 (RIN4) family protein4.4e-1745.67Show/hide
Query:  MDTRVEKNNRWKSVPEFGGWDHNAPG-ASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHR
        MD R E N  W  VP+FGGWD   P  A+NYSVVFS+ARANRKQ K  +   + +SLG+E+E+M                        S   +H Q  HR
Subjt:  MDTRVEKNNRWKSVPEFGGWDHNAPG-ASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHR

Query:  LRPHQHDPVVPQKKKKILTYINCCIRP
              DPV+  KKK+ILTYINCCIRP
Subjt:  LRPHQHDPVVPQKKKKILTYINCCIRP

AT5G64850.1 FUNCTIONS IN: molecular_function unknown4.2e-0431.5Show/hide
Query:  DTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHR---HHSHHSHHSRYEHHPQYQH
        D +  KN+ W SVP+FG WD    G+ +YS+ FS+ R  RK  K D +   RASLGNE E++               +    HS +++ + + HH     
Subjt:  DTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHR---HHSHHSHHSRYEHHPQYQH

Query:  RLRPHQHDPVVPQKKKKILTYINCCIR
            H H    P ++++I +  NCC++
Subjt:  RLRPHQHDPVVPQKKKKILTYINCCIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACTCGGGTGGAGAAAAACAATAGGTGGAAATCTGTTCCAGAGTTTGGGGGATGGGATCACAACGCACCTGGGGCAAGCAATTATTCTGTTGTATTCTCTCAAGC
TCGTGCAAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAGCCAGCCTTGGAAATGAGAGGGAGATGATGGCAATGGCAGATAAACATCTTCGCCAACAGA
ACCACCACCACCACCGCCACCACAGCCACCACAGCCACCACAGCCGCTATGAACACCACCCACAATATCAACATCGTCTTCGCCCCCACCAGCACGACCCTGTTGTCCCG
CAGAAGAAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATACTCGGGTGGAGAAAAACAATAGGTGGAAATCTGTTCCAGAGTTTGGGGGATGGGATCACAACGCACCTGGGGCAAGCAATTATTCTGTTGTATTCTCTCAAGC
TCGTGCAAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAGCCAGCCTTGGAAATGAGAGGGAGATGATGGCAATGGCAGATAAACATCTTCGCCAACAGA
ACCACCACCACCACCGCCACCACAGCCACCACAGCCACCACAGCCGCTATGAACACCACCCACAATATCAACATCGTCTTCGCCCCCACCAGCACGACCCTGTTGTCCCG
CAGAAGAAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGA
Protein sequenceShow/hide protein sequence
MDTRVEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMADKHLRQQNHHHHRHHSHHSHHSRYEHHPQYQHRLRPHQHDPVVP
QKKKKILTYINCCIRP