; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh02G013900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G013900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionhistone deacetylase HDT1-like
Genome locationCmo_Chr02:8246222..8246949
RNA-Seq ExpressionCmoCh02G013900
SyntenyCmoCh02G013900
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
InterPro domainsIPR041232 - Nucleoplasmin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606012.1 Histone deacetylase HDT1, partial [Cucurbita argyrosperma subsp. sororia]3.7e-51100Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  DP
        DP
Subjt:  DP

XP_022958436.1 histone deacetylase HDT1-like [Cucurbita moschata]3.7e-51100Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  DP
        DP
Subjt:  DP

XP_022996072.1 histone deacetylase HDT1-like [Cucurbita maxima]1.8e-5099.02Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGE KKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  DP
        DP
Subjt:  DP

XP_023522031.1 histone deacetylase HDT1-like [Cucurbita pepo subsp. pepo]1.8e-5098.04Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGVEVKPGQ+LVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILS+EKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  DP
        DP
Subjt:  DP

XP_023533761.1 histone deacetylase HDT1-like isoform X1 [Cucurbita pepo subsp. pepo]4.1e-5098.04Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGVEVKPGQ+LVVKPGIQQYLHLSQATLGE KKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  DP
        DP
Subjt:  DP

TrEMBL top hitse value%identityAlignment
A0A6J1CFU4 histone deacetylase HDT1-like7.8e-4788.68Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGVEVKPGQSLVVKPG Q+YLHLSQAT+GETKKDKANENVTIFLKIG QKLVLGILSAEKFP LSFDLVFEKEFELSHNGKGGSVYC GYQA+AEDQ
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  DPYPFL
        +   +L
Subjt:  DPYPFL

A0A6J1FU30 histone deacetylase HDT1-like4.3e-4591.09Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGVEVK G+ LVVKPGIQ+YLHLSQATLGE KKDKANENVTIFLKIG QKLVLGILSAEKFPQLSFDLVFEKEFELSHNGK GSVYCAGYQA+AEDQ
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  D
        +
Subjt:  D

A0A6J1H225 histone deacetylase HDT1-like1.8e-51100Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  DP
        DP
Subjt:  DP

A0A6J1JAV1 histone deacetylase HDT1-like6.6e-4692.08Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGVEVK G+ LVVKPGIQ+YLHLSQATLGE KKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGK GSVYCAGYQA+AEDQ
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  D
        +
Subjt:  D

A0A6J1K0W9 histone deacetylase HDT1-like8.9e-5199.02Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGE KKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  DP
        DP
Subjt:  DP

SwissProt top hitse value%identityAlignment
O24591 Histone deacetylase HDT19.9e-2351.46Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGY---QAYA
        MEFWG+EVKPG ++  +PG    LHLSQA LGE+KK   ++N  +++KI  QKL +G LS +K P + FDL+F+KEFELSH  K  SV+  GY   Q + 
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGY---QAYA

Query:  EDQ
        ED+
Subjt:  EDQ

Q6V9I6 Histone deacetylase HDT11.5e-2658.65Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQA---YA
        MEFWG EVK G+ L V+PG    LHLSQA+LGE KKDK +E+V + + I G+KLVLG L++EK PQ  FDLVF+++FELSHN K GSVY  GY+A   + 
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQA---YA

Query:  EDQD
        E++D
Subjt:  EDQD

Q8LJS2 Histone deacetylase HDT11.2e-2349.53Show/hide
Query:  MEFWGVEVKPGQSLVVKP--GIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAE
        MEFWGVEVK GQ++ V P   +  Y+H+SQ  LGE KKDK NE V ++LK+G QK+VLG LS +  P LS DLV + + ELSH  K  SV+  GY+    
Subjt:  MEFWGVEVKPGQSLVVKP--GIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAE

Query:  DQDPYPF
        + +   F
Subjt:  DQDPYPF

Q9LZR5 Histone deacetylase HDT39.9e-2348.04Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGVEVK G+ L + PG+ + +H+SQ  LGE+ K+   E + +++ +G  KL++G LS EKFPQLS ++V E+ F LSH  K GSV+ +GY+  A D 
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  DP
        +P
Subjt:  DP

Q9M4U4 Histone deacetylase HDT39.9e-2351.46Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGY---QAYA
        MEFWG+EVKPG ++  +PG    LHLSQA LGE+KK   ++N  +++KI  QKL +G LS +K P + FDL+F+KEFELSH  K  SV+  GY   Q + 
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGY---QAYA

Query:  EDQ
        ED+
Subjt:  EDQ

Arabidopsis top hitse value%identityAlignment
AT3G44750.1 histone deacetylase 31.0e-2250.93Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGY-------
        MEFWG+EVK G+ + V P     +H+SQA+LGE  K+K  E V + +K+G Q LVLG LS E  PQL  DLVF+KEFELSH    GSVY  GY       
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGY-------

Query:  QAYAEDQD
        Q Y+E+++
Subjt:  QAYAEDQD

AT3G44750.2 histone deacetylase 31.0e-2250.93Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGY-------
        MEFWG+EVK G+ + V P     +H+SQA+LGE  K+K  E V + +K+G Q LVLG LS E  PQL  DLVF+KEFELSH    GSVY  GY       
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGY-------

Query:  QAYAEDQD
        Q Y+E+++
Subjt:  QAYAEDQD

AT5G03740.1 histone deacetylase 2C7.0e-2448.04Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGVEVK G+ L + PG+ + +H+SQ  LGE+ K+   E + +++ +G  KL++G LS EKFPQLS ++V E+ F LSH  K GSV+ +GY+  A D 
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  DP
        +P
Subjt:  DP

AT5G22650.1 histone deacetylase 2B1.1e-2148.54Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGV V P  +  V P     +H+SQA+L  T   K+ E+V + + +GG KLV+G LS +KFPQ+SFDLVF+KEFELSH+G   +V+  GY++   +Q
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  DPY
        D +
Subjt:  DPY

AT5G22650.2 histone deacetylase 2B1.1e-2148.54Show/hide
Query:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ
        MEFWGV V P  +  V P     +H+SQA+L  T   K+ E+V + + +GG KLV+G LS +KFPQ+SFDLVF+KEFELSH+G   +V+  GY++   +Q
Subjt:  MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQ

Query:  DPY
        D +
Subjt:  DPY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTTGGGGTGTTGAAGTCAAGCCTGGTCAGTCACTCGTTGTGAAGCCTGGAATTCAGCAATACCTGCATCTATCACAGGCGACTCTAGGTGAAACAAAGAAGGA
CAAAGCAAATGAAAACGTGACTATCTTCTTGAAGATTGGTGGCCAAAAGCTTGTTCTTGGCATTCTCTCCGCAGAGAAGTTTCCCCAGCTATCATTTGATCTTGTGTTTG
AGAAGGAATTTGAGCTCTCCCATAATGGGAAAGGTGGAAGTGTTTACTGTGCTGGATACCAGGCTTATGCCGAGGATCAAGATCCATATCCTTTCTTGCCTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTTTGGGGTGTTGAAGTCAAGCCTGGTCAGTCACTCGTTGTGAAGCCTGGAATTCAGCAATACCTGCATCTATCACAGGCGACTCTAGGTGAAACAAAGAAGGA
CAAAGCAAATGAAAACGTGACTATCTTCTTGAAGATTGGTGGCCAAAAGCTTGTTCTTGGCATTCTCTCCGCAGAGAAGTTTCCCCAGCTATCATTTGATCTTGTGTTTG
AGAAGGAATTTGAGCTCTCCCATAATGGGAAAGGTGGAAGTGTTTACTGTGCTGGATACCAGGCTTATGCCGAGGATCAAGATCCATATCCTTTCTTGCCTTTTTGA
Protein sequenceShow/hide protein sequence
MEFWGVEVKPGQSLVVKPGIQQYLHLSQATLGETKKDKANENVTIFLKIGGQKLVLGILSAEKFPQLSFDLVFEKEFELSHNGKGGSVYCAGYQAYAEDQDPYPFLPF