; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh02G014080 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G014080
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSerine/arginine repetitive matrix protein 1-like
Genome locationCmo_Chr02:8352475..8353128
RNA-Seq ExpressionCmoCh02G014080
SyntenyCmoCh02G014080
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR007592 - GLABROUS1 enhancer-binding protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037301.1 serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa]5.9e-6464.32Show/hide
Query:  MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQL--QVHFTDEDELDLLNCYLEVAGS----KNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYH
        MSTP RS PS    AS +     LT +Q N    Q+HFTDEDE++LL  YL+++ S    KNS PTLDSPA DR+ TA+G KF HS IADKLHRLK+ YH
Subjt:  MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQL--QVHFTDEDELDLLNCYLEVAGS----KNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYH

Query:  KFARTKSFIKTPHHLRILEIGRSIWGKPHIPRT-KPQVI------SRRIRGRSVARKKGV----DLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKG
        KFARTKSFIKTPH  +IL++GRSIWGK   P T KPQVI      SRRI+ RS  RK+GV    DLKNFPVLV+EFS+QFPGNGVWREGL+ MEE +LK 
Subjt:  KFARTKSFIKTPHHLRILEIGRSIWGKPHIPRT-KPQVI------SRRIRGRSVARKKGV----DLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKG

Query:  MNEKWVLLHIEEAELKARRVALIQRQI
        MNEKWVLLHIE AELKARR AL+++Q+
Subjt:  MNEKWVLLHIEEAELKARRVALIQRQI

KAG6570827.1 hypothetical protein SDJN03_29742, partial [Cucurbita argyrosperma subsp. sororia]2.2e-7168.81Show/hide
Query:  MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGS----KNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKF
        MSTP R PP       S+A+PE LT         HF++EDEL+LLNCYL++A S     NSQPTLDSPALDRI TAL  KF +SHIADKLHRLK+QYHK 
Subjt:  MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGS----KNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKF

Query:  ARTKSFIKTPHHLRILEIGRSIWGKPHIPRTKPQ----VISRRIRGRSVARKKGVDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLH
        ARTKS IKTPHH RILEIGRSIWGKP   RTKPQ     I RRI+ RS + KKGVDL +FPVL+SEFSR+FPGNGVW+EGL+GMEE SL+ MNEKWVLLH
Subjt:  ARTKSFIKTPHHLRILEIGRSIWGKPHIPRTKPQ----VISRRIRGRSVARKKGVDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLH

Query:  IEEAELKARRVALIQRQI
        IEEAELKARR AL+Q+Q+
Subjt:  IEEAELKARRVALIQRQI

KAG6606028.1 hypothetical protein SDJN03_03345, partial [Cucurbita argyrosperma subsp. sororia]4.1e-11899.54Show/hide
Query:  MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGSKNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTK
        MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGSKNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTK
Subjt:  MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGSKNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTK

Query:  SFIKTPHHLRILEIGRSIWGKPHIPRTKPQVISRRIRGRSVARKKGVDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLHIEEAELKA
        SFIKTPHHLRILEIGRSIWGKPHIPRTKPQVISRRIRGRSVA+KKGVDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLHIEEAELKA
Subjt:  SFIKTPHHLRILEIGRSIWGKPHIPRTKPQVISRRIRGRSVARKKGVDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLHIEEAELKA

Query:  RRVALIQRQIGTTQTKD
        RRVALIQRQIGTTQTKD
Subjt:  RRVALIQRQIGTTQTKD

KGN46890.1 hypothetical protein Csa_020607 [Cucumis sativus]2.5e-6763.79Show/hide
Query:  MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGS----KNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKF
        MST  RSPPS+       A+PE LTQS     Q+HF DEDE++LLN YL+++ S    KNS PTLDS A DR+ TA+G KF HS IADKLHRLK+ YHKF
Subjt:  MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGS----KNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKF

Query:  ARTKSFIKTPHHLRILEIGRSIWGKPHIPRT-KPQVI------SRRIRGRSVARKKG----VDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMN
        ARTKSFIKTPH  +IL++GRSIWGK   P T KPQVI      SRRI+ RS+ RK+G    VDLKNFPVLV+EFSRQFPGNGVWR+GL+ M E +LK MN
Subjt:  ARTKSFIKTPHHLRILEIGRSIWGKPHIPRT-KPQVI------SRRIRGRSVARKKG----VDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMN

Query:  EKWVLLHIEEAELKARRVALIQRQIGTTQTKD
        EKWVLLHIE AELKARR AL++ Q+ TT+T +
Subjt:  EKWVLLHIEEAELKARRVALIQRQIGTTQTKD

XP_015873627.1 probable transcription factor At1g61730 [Ziziphus jujuba]3.3e-3042.36Show/hide
Query:  SPPSTGN----RASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGSKNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTKSF
        SP +T N     +SS + PE  + SQK + Q  FT+EDE  LL  +  +  S      ++SP LDRI  +LG +F H+ I DKL RL+++YHK ARTKS 
Subjt:  SPPSTGN----RASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGSKNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTKSF

Query:  IKTPHHLRILEIGRSIWGKPHIPRTKPQVISRRIRGRSVARKKGVDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLHIEEAELKARR
        IKT H   + +I R IWG+     ++              R   V L+ FPVL  E      GN VW++GL G+EE +LKG+NEKW+LL +EEAE+ A R
Subjt:  IKTPHHLRILEIGRSIWGKPHIPRTKPQVISRRIRGRSVARKKGVDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLHIEEAELKARR

Query:  VAL
          L
Subjt:  VAL

TrEMBL top hitse value%identityAlignment
A0A0A0KAX7 Uncharacterized protein1.2e-6763.79Show/hide
Query:  MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGS----KNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKF
        MST  RSPPS+       A+PE LTQS     Q+HF DEDE++LLN YL+++ S    KNS PTLDS A DR+ TA+G KF HS IADKLHRLK+ YHKF
Subjt:  MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGS----KNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKF

Query:  ARTKSFIKTPHHLRILEIGRSIWGKPHIPRT-KPQVI------SRRIRGRSVARKKG----VDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMN
        ARTKSFIKTPH  +IL++GRSIWGK   P T KPQVI      SRRI+ RS+ RK+G    VDLKNFPVLV+EFSRQFPGNGVWR+GL+ M E +LK MN
Subjt:  ARTKSFIKTPHHLRILEIGRSIWGKPHIPRT-KPQVI------SRRIRGRSVARKKG----VDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMN

Query:  EKWVLLHIEEAELKARRVALIQRQIGTTQTKD
        EKWVLLHIE AELKARR AL++ Q+ TT+T +
Subjt:  EKWVLLHIEEAELKARRVALIQRQIGTTQTKD

A0A5A7T6T1 Serine/arginine repetitive matrix protein 1-like2.8e-6464.32Show/hide
Query:  MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQL--QVHFTDEDELDLLNCYLEVAGS----KNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYH
        MSTP RS PS    AS +     LT +Q N    Q+HFTDEDE++LL  YL+++ S    KNS PTLDSPA DR+ TA+G KF HS IADKLHRLK+ YH
Subjt:  MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQL--QVHFTDEDELDLLNCYLEVAGS----KNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYH

Query:  KFARTKSFIKTPHHLRILEIGRSIWGKPHIPRT-KPQVI------SRRIRGRSVARKKGV----DLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKG
        KFARTKSFIKTPH  +IL++GRSIWGK   P T KPQVI      SRRI+ RS  RK+GV    DLKNFPVLV+EFS+QFPGNGVWREGL+ MEE +LK 
Subjt:  KFARTKSFIKTPHHLRILEIGRSIWGKPHIPRT-KPQVI------SRRIRGRSVARKKGV----DLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKG

Query:  MNEKWVLLHIEEAELKARRVALIQRQI
        MNEKWVLLHIE AELKARR AL+++Q+
Subjt:  MNEKWVLLHIEEAELKARRVALIQRQI

A0A6A2Z6N0 Uncharacterized protein3.0e-2941.24Show/hide
Query:  PEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGSKNSQP---TLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTKSFIKTPHHLRILEIGRS
        P P T +   +    F++ DE+ +L C   V  +K+  P   T+ +P ++RI   L  KF  S I DKL RL+ +YHK AR KS ++T H  RI ++ + 
Subjt:  PEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGSKNSQP---TLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTKSFIKTPHHLRILEIGRS

Query:  IWGKPHIPRTKPQVISRRIRGRSVARKKGV-DLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLHIEEAELKARRVALIQRQI
        IWGK  IPR K   +          ++ GV +L NF  LV+EFSR  PGN VW+E + GM E  L+ M+++WV L +EEA+L AR+  LIQ+QI
Subjt:  IWGKPHIPRTKPQVISRRIRGRSVARKKGV-DLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLHIEEAELKARRVALIQRQI

A0A6P3Z773 probable transcription factor At1g617301.6e-3042.36Show/hide
Query:  SPPSTGN----RASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGSKNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTKSF
        SP +T N     +SS + PE  + SQK + Q  FT+EDE  LL  +  +  S      ++SP LDRI  +LG +F H+ I DKL RL+++YHK ARTKS 
Subjt:  SPPSTGN----RASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGSKNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTKSF

Query:  IKTPHHLRILEIGRSIWGKPHIPRTKPQVISRRIRGRSVARKKGVDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLHIEEAELKARR
        IKT H   + +I R IWG+     ++              R   V L+ FPVL  E      GN VW++GL G+EE +LKG+NEKW+LL +EEAE+ A R
Subjt:  IKTPHHLRILEIGRSIWGKPHIPRTKPQVISRRIRGRSVARKKGVDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLHIEEAELKARR

Query:  VAL
          L
Subjt:  VAL

W9SBT1 Uncharacterized protein1.7e-2940.88Show/hide
Query:  FTDEDELDLLNCYLEVAGSKN-----------SQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTKSFIKTPHHLRILEIGRSIWGKPHI
        F++ DE+ LL  + +++ S +           S  T+ S  LD I ++LG +F H+ I DKL RLK++YH+ ARTKS I+T H LR+  I RSIWG+ +I
Subjt:  FTDEDELDLLNCYLEVAGSKN-----------SQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTKSFIKTPHHLRILEIGRSIWGKPHI

Query:  PRTKPQVISRRIRGRSVARKKGVDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLHIEEAELKARRVAL
           K  +   + +G +      V L++FP L  EFSR  P NGVW++GLK +    ++G NE+W+L+  EEAEL+A+R  L
Subjt:  PRTKPQVISRRIRGRSVARKKGVDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLHIEEAELKARRVAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACGCCCCGCCGCTCGCCGCCGTCGACCGGAAACCGCGCCTCTTCCGACGCCGCTCCCGAACCCCTAACCCAATCCCAGAAAAATCAACTTCAAGTCCATTTCAC
CGACGAAGACGAACTCGATCTTCTCAATTGCTACCTCGAAGTCGCCGGATCCAAGAATTCTCAGCCCACTCTCGACTCTCCGGCCTTGGACCGCATTGCGACCGCCCTCG
GCCACAAATTCAGGCACTCCCACATCGCCGACAAGCTCCACAGGCTCAAGATCCAGTACCACAAATTCGCAAGAACCAAGTCCTTCATCAAAACTCCCCACCACCTACGG
ATTCTGGAGATTGGGCGCAGCATCTGGGGAAAACCCCACATTCCCAGAACAAAACCGCAGGTAATTTCACGCAGAATTAGAGGAAGATCAGTGGCAAGGAAAAAGGGGGT
TGATCTGAAGAACTTTCCTGTTCTTGTGAGTGAATTTTCCCGGCAGTTCCCGGGAAATGGAGTGTGGAGAGAGGGGCTGAAGGGAATGGAGGAGTGGAGTTTGAAAGGTA
TGAATGAGAAGTGGGTTCTGTTGCATATTGAAGAGGCAGAGCTTAAGGCAAGAAGGGTTGCGCTAATACAGCGGCAAATTGGAACAACACAAACTAAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAACGCCCCGCCGCTCGCCGCCGTCGACCGGAAACCGCGCCTCTTCCGACGCCGCTCCCGAACCCCTAACCCAATCCCAGAAAAATCAACTTCAAGTCCATTTCAC
CGACGAAGACGAACTCGATCTTCTCAATTGCTACCTCGAAGTCGCCGGATCCAAGAATTCTCAGCCCACTCTCGACTCTCCGGCCTTGGACCGCATTGCGACCGCCCTCG
GCCACAAATTCAGGCACTCCCACATCGCCGACAAGCTCCACAGGCTCAAGATCCAGTACCACAAATTCGCAAGAACCAAGTCCTTCATCAAAACTCCCCACCACCTACGG
ATTCTGGAGATTGGGCGCAGCATCTGGGGAAAACCCCACATTCCCAGAACAAAACCGCAGGTAATTTCACGCAGAATTAGAGGAAGATCAGTGGCAAGGAAAAAGGGGGT
TGATCTGAAGAACTTTCCTGTTCTTGTGAGTGAATTTTCCCGGCAGTTCCCGGGAAATGGAGTGTGGAGAGAGGGGCTGAAGGGAATGGAGGAGTGGAGTTTGAAAGGTA
TGAATGAGAAGTGGGTTCTGTTGCATATTGAAGAGGCAGAGCTTAAGGCAAGAAGGGTTGCGCTAATACAGCGGCAAATTGGAACAACACAAACTAAAGATTGA
Protein sequenceShow/hide protein sequence
MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGSKNSQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTKSFIKTPHHLR
ILEIGRSIWGKPHIPRTKPQVISRRIRGRSVARKKGVDLKNFPVLVSEFSRQFPGNGVWREGLKGMEEWSLKGMNEKWVLLHIEEAELKARRVALIQRQIGTTQTKD