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CmoCh02G014340 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G014340
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionarabinogalactan peptide 22-like
Genome locationCmo_Chr02:8464655..8465284
RNA-Seq ExpressionCmoCh02G014340
SyntenyCmoCh02G014340
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579545.1 Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]5.8e-1175.41Show/hide
Query:  IAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPIS
        I V F LAML PA A   SL+PAQPP ASDGTS+DQGIAYVLMLLAL+LTYIIH A+L IS
Subjt:  IAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPIS

KAG6606052.1 Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]7.5e-4398.98Show/hide
Query:  MPFEACSGYKTQTLDWLKATPPLQRRGEQPSSSSGLIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
        MPFEACSGYKTQTLDWLKATPPLQRRGEQPSSSSGLIAVAFALAMLFPASAADP LSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
Subjt:  MPFEACSGYKTQTLDWLKATPPLQRRGEQPSSSSGLIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL

KAG7036000.1 Arabinogalactan peptide 20 [Cucurbita argyrosperma subsp. argyrosperma]3.6e-2198.41Show/hide
Query:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
        L+AVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
Subjt:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL

XP_022996281.1 arabinogalactan peptide 22-like [Cucurbita maxima]1.1e-2096.83Show/hide
Query:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
        L+AVAF LAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
Subjt:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL

XP_023532560.1 arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]1.1e-2096.83Show/hide
Query:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
        L+AVAF LAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
Subjt:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL

TrEMBL top hitse value%identityAlignment
A0A0A0KK44 Uncharacterized protein5.0e-0864.06Show/hide
Query:  GLIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
        G I    AL +   +SA   SLSPAQPP   DGTS+DQGIAYVLMLLAL+LTYIIH A+L +SL
Subjt:  GLIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL

A0A1S3ATI9 arabinogalactan peptide 22-like3.8e-0866.67Show/hide
Query:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
        L  VA  L  L PA A   SLSPAQPP  SDGTS+DQGIAY LMLLAL+LTYIIH A+  +SL
Subjt:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL

A0A5D3C2F1 Arabinogalactan peptide 22-like3.8e-0866.67Show/hide
Query:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
        L  VA  L  L PA A   SLSPAQPP  SDGTS+DQGIAY LMLLAL+LTYIIH A+  +SL
Subjt:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL

A0A6J1CXM0 arabinogalactan peptide 22-like3.8e-0865.08Show/hide
Query:  IAVAFALAMLFP--ASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPIS
        +AVAF L    P  A A   S+SPAQP   SDGTS+DQGIAY LMLLAL+LTYIIH A+L IS
Subjt:  IAVAFALAMLFP--ASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPIS

A0A6J1K4A3 arabinogalactan peptide 22-like5.1e-2196.83Show/hide
Query:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
        L+AVAF LAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL
Subjt:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 162.2e-0550Show/hide
Query:  SSSSGLIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH
        +S +G    +F  A++   + A  SL+PA  P  SDGTS+DQGIAY+LM++AL+LTY+IH
Subjt:  SSSSGLIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH

Q8L9T8 Arabinogalactan protein 413.8e-0557.69Show/hide
Query:  VAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH
        V+   A+L P + A  S +PA  P  SDGT++DQGIAYVLML+AL+LTY+IH
Subjt:  VAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH

Q9FK16 Arabinogalactan protein 228.4e-0552.73Show/hide
Query:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH
        ++AV   ++++    A   S SPA  P  SDGTS+DQGIAYVLM++AL LTY IH
Subjt:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH

Q9M373 Arabinogalactan protein 201.0e-0555Show/hide
Query:  SSSGLIAV-AFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH
        +S  +IA+ AF  A++ P + A  SL+PA  P  SDGTS+DQGIAY+LM++AL+LTY+IH
Subjt:  SSSGLIAV-AFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 161.6e-0650Show/hide
Query:  SSSSGLIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH
        +S +G    +F  A++   + A  SL+PA  P  SDGTS+DQGIAY+LM++AL+LTY+IH
Subjt:  SSSSGLIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH

AT3G61640.1 arabinogalactan protein 207.1e-0755Show/hide
Query:  SSSGLIAV-AFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH
        +S  +IA+ AF  A++ P + A  SL+PA  P  SDGTS+DQGIAY+LM++AL+LTY+IH
Subjt:  SSSGLIAV-AFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH

AT5G24105.1 arabinogalactan protein 412.7e-0657.69Show/hide
Query:  VAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH
        V+   A+L P + A  S +PA  P  SDGT++DQGIAYVLML+AL+LTY+IH
Subjt:  VAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH

AT5G53250.1 arabinogalactan protein 226.0e-0652.73Show/hide
Query:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH
        ++AV   ++++    A   S SPA  P  SDGTS+DQGIAYVLM++AL LTY IH
Subjt:  LIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTCGAAGCATGCAGCGGGTATAAGACCCAGACCCTGGATTGGTTGAAAGCCACACCGCCATTGCAACGCCGTGGAGAGCAGCCATCGTCGTCTTCGGGATTGAT
CGCTGTTGCTTTTGCTTTGGCTATGCTTTTCCCTGCCTCCGCCGCTGATCCTTCTTTGTCTCCAGCCCAACCTCCCATTGCTAGCGATGGGACGAGCTTAGACCAAGGAA
TAGCGTACGTGCTGATGTTGTTGGCGTTGCTGCTAACTTACATTATTCATTTAGCAGAGCTTCCAATCAGTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGTTCGAAGCATGCAGCGGGTATAAGACCCAGACCCTGGATTGGTTGAAAGCCACACCGCCATTGCAACGCCGTGGAGAGCAGCCATCGTCGTCTTCGGGATTGAT
CGCTGTTGCTTTTGCTTTGGCTATGCTTTTCCCTGCCTCCGCCGCTGATCCTTCTTTGTCTCCAGCCCAACCTCCCATTGCTAGCGATGGGACGAGCTTAGACCAAGGAA
TAGCGTACGTGCTGATGTTGTTGGCGTTGCTGCTAACTTACATTATTCATTTAGCAGAGCTTCCAATCAGTTTGTAAAATTAGTGCACAAAATAATTAAATTCAATCCCG
AGAGCTCCAATGTAAAAAGTGGGGTTTTTGTTTTCTTTTCCTTCGCAGTTTAATGTCAATTGATGCAATGATCATTTCTTTTTTAC
Protein sequenceShow/hide protein sequence
MPFEACSGYKTQTLDWLKATPPLQRRGEQPSSSSGLIAVAFALAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLALLLTYIIHLAELPISL