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CmoCh02G015750 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G015750
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA mismatch repair protein MSH4
Genome locationCmo_Chr02:9092525..9095705
RNA-Seq ExpressionCmoCh02G015750
SyntenyCmoCh02G015750
Gene Ontology termsGO:0007129 - synapsis (biological process)
GO:0010777 - meiotic mismatch repair involved in reciprocal meiotic recombination (biological process)
GO:0000794 - condensed nuclear chromosome (cellular component)
GO:0043073 - germ cell nucleus (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0030983 - mismatched DNA binding (molecular function)
InterPro domainsIPR036678 - MutS, connector domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606169.1 DNA mismatch repair protein MSH4, partial [Cucurbita argyrosperma subsp. sororia]9.4e-5886.3Show/hide
Query:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML
        MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD+FYVTVKK          
Subjt:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML

Query:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
                 GAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
Subjt:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK

KAG7036113.1 DNA mismatch repair protein MSH4, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-6489.61Show/hide
Query:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPS---
        MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD+FYVTVKK      S   
Subjt:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPS---

Query:  -----SMLRSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
              MLRSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
Subjt:  -----SMLRSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK

XP_022957703.1 DNA mismatch repair protein MSH4 [Cucurbita moschata]1.7e-5989.73Show/hide
Query:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML
        MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKV       M 
Subjt:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML

Query:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
        R     T +GAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
Subjt:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK

XP_022996171.1 DNA mismatch repair protein MSH4 [Cucurbita maxima]1.1e-5888.36Show/hide
Query:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML
        MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD+FYV+VKKV       M 
Subjt:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML

Query:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
        R     T +GAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
Subjt:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK

XP_023521478.1 DNA mismatch repair protein MSH4-like [Cucurbita pepo subsp. pepo]3.8e-5989.04Show/hide
Query:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML
        MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD+FYVTVKKV       M 
Subjt:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML

Query:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
        R     T +GAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
Subjt:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK

TrEMBL top hitse value%identityAlignment
A0A2P5B2Z7 DNA mismatch repair2.1e-5582.88Show/hide
Query:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML
        MEDDGGE+SS+VIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTL+HFYDPMVI+VPPNKLAPDGMVGVS LVD+FY +VKKV       M 
Subjt:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML

Query:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
        RS    T +GAVLIKNLAAKEPSALGL+TYYKQYYLCLAA AA+IK
Subjt:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK

A0A6J1DNB3 DNA mismatch repair protein MSH48.6e-5786.3Show/hide
Query:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML
        MEDD GERSSYVI LIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVL D+FY TVKKV       M 
Subjt:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML

Query:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
        R     T +GAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
Subjt:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK

A0A6J1H107 DNA mismatch repair protein MSH48.3e-6089.73Show/hide
Query:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML
        MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKV       M 
Subjt:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML

Query:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
        R     T +GAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
Subjt:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK

A0A6J1K3Y6 DNA mismatch repair protein MSH45.4e-5988.36Show/hide
Query:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML
        MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVD+FYV+VKKV       M 
Subjt:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML

Query:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
        R     T +GAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
Subjt:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK

A0A7J6FVF0 Uncharacterized protein6.2e-5582.19Show/hide
Query:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML
        MEDDGGE+SS+VIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVI+VPPNKLAP+GMVGVS LVD+FY +V+KV       M 
Subjt:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML

Query:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
        RS    T +GAVLIKNLAAKEPSALGL+TYYKQYYLCLAA AA+IK
Subjt:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK

SwissProt top hitse value%identityAlignment
F4JP48 DNA mismatch repair protein MSH41.5e-5076.03Show/hide
Query:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML
        MEDDGGERSS+V GLIENRAKEVG+AAFDLRSASLHLSQYIETSSSYQNTKTLL FYDP VI+VPPNKLA DGMVGVS LVD+ Y TV+KV         
Subjt:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML

Query:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
        R     T +GAVLI+NLAA+EP ALGL+TYYKQ+YL LAAAAA+IK
Subjt:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK

Arabidopsis top hitse value%identityAlignment
AT4G17380.1 MUTS-like protein 41.1e-5176.03Show/hide
Query:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML
        MEDDGGERSS+V GLIENRAKEVG+AAFDLRSASLHLSQYIETSSSYQNTKTLL FYDP VI+VPPNKLA DGMVGVS LVD+ Y TV+KV         
Subjt:  MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSML

Query:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK
        R     T +GAVLI+NLAA+EP ALGL+TYYKQ+YL LAAAAA+IK
Subjt:  RSYLSRTFQGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGACGACGGAGGCGAGAGATCGAGCTACGTGATCGGTCTGATCGAGAACAGAGCTAAGGAGGTTGGAGTTGCTGCGTTCGATTTGAGATCAGCTTCACTTCATCT
TTCTCAATATATAGAGACCAGCAGCTCCTACCAGAATACAAAAACTTTGCTGCATTTCTATGATCCAATGGTGATTCTAGTTCCTCCCAACAAGCTCGCACCTGATGGCA
TGGTTGGAGTTTCTGTTTTGGTAGATAAATTTTATGTTACAGTGAAGAAGGTAAGTTCATATTCACCGAGTTCTATGCTCAGATCATATCTTAGTCGAACTTTCCAGGGT
GCTGTTTTGATTAAGAATCTGGCAGCCAAGGAGCCTTCTGCTCTTGGTTTGGAAACTTATTACAAACAGTACTATCTCTGCTTGGCTGCTGCTGCTGCTAGCATTAAATG
A
mRNA sequenceShow/hide mRNA sequence
ATGGAAGACGACGGAGGCGAGAGATCGAGCTACGTGATCGGTCTGATCGAGAACAGAGCTAAGGAGGTTGGAGTTGCTGCGTTCGATTTGAGATCAGCTTCACTTCATCT
TTCTCAATATATAGAGACCAGCAGCTCCTACCAGAATACAAAAACTTTGCTGCATTTCTATGATCCAATGGTGATTCTAGTTCCTCCCAACAAGCTCGCACCTGATGGCA
TGGTTGGAGTTTCTGTTTTGGTAGATAAATTTTATGTTACAGTGAAGAAGGTAAGTTCATATTCACCGAGTTCTATGCTCAGATCATATCTTAGTCGAACTTTCCAGGGT
GCTGTTTTGATTAAGAATCTGGCAGCCAAGGAGCCTTCTGCTCTTGGTTTGGAAACTTATTACAAACAGTACTATCTCTGCTTGGCTGCTGCTGCTGCTAGCATTAAATG
ACAAGGCTTGTACTGTGCATTGGTTGAGTCGCGAATCATTTTGACTCTTTTTGTAACTTTTAGGTCACATTTAATGGTTCATCTGATCATTGTTCAGAATTTAGAAATTA
TTGAGCCACTTCACTCCAACCTTTGGGGAACAAGCAACAAGAAGAGAAGTCTGTTCCACATGCTCAAGACAACTAAAACTATAGGAGGGTCTAGACTTCTTCGTGCCAAT
CTTTTGCAGCCATTAAAAGATATTGAAACCATTAATGCCCGTCTGGATTGCCTGGTTAGTATCATACATGGTTAA
Protein sequenceShow/hide protein sequence
MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLVDKFYVTVKKVSSYSPSSMLRSYLSRTFQG
AVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIK