; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh02G016710 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G016710
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosome maturation factor
Genome locationCmo_Chr02:9590017..9591452
RNA-Seq ExpressionCmoCh02G016710
SyntenyCmoCh02G016710
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606266.1 hypothetical protein SDJN03_03583, partial [Cucurbita argyrosperma subsp. sororia]1.0e-8199.37Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTI CFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
XP_004136199.1 uncharacterized protein LOC101212292 isoform X2 [Cucumis sativus]3.4e-6986.08Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSS  ILNY GQDD+K+SKSFRFSFP+PSP RQEK VHAIPILTI CFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFK PS+ LEIKA+GDELI+PKKGNILAIQS RNLKEIEKS+SL+SR PRKL DF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
XP_008466005.1 PREDICTED: uncharacterized protein LOC103503567 isoform X2 [Cucumis melo]2.9e-6886.16Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSS  ILNY GQDD+K+SKSFRFSFP+PSP RQEK VHAIPILTI CFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKA-EGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPS+ LEIKA +G ELI+PKKGNILAIQS RNLKEIEKSHSL+SR PRKL DF
Subjt:  QFHGFKRPSEHLEIKA-EGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
XP_022930990.1 uncharacterized protein LOC111437318 [Cucurbita moschata]2.0e-82100Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
XP_022995482.1 uncharacterized protein LOC111491006 [Cucurbita maxima]3.6e-7996.84Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSS LILNYDGQDD+KASKSFRFSFPTPSPQRQEKFVHAIPILTI CFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSR PRKL DF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
TrEMBL top hitse value%identityAlignment
A0A0A0LE94 Uncharacterized protein1.6e-6986.08Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSS  ILNY GQDD+K+SKSFRFSFP+PSP RQEK VHAIPILTI CFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFK PS+ LEIKA+GDELI+PKKGNILAIQS RNLKEIEKS+SL+SR PRKL DF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
A0A1S3CQJ2 uncharacterized protein LOC103503567 isoform X21.4e-6886.16Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSS  ILNY GQDD+K+SKSFRFSFP+PSP RQEK VHAIPILTI CFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKA-EGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPS+ LEIKA +G ELI+PKKGNILAIQS RNLKEIEKSHSL+SR PRKL DF
Subjt:  QFHGFKRPSEHLEIKA-EGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
A0A5A7T6T2 Uncharacterized protein1.4e-6886.16Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSS  ILNY GQDD+K+SKSFRFSFP+PSP RQEK VHAIPILTI CFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKA-EGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPS+ LEIKA +G ELI+PKKGNILAIQS RNLKEIEKSHSL+SR PRKL DF
Subjt:  QFHGFKRPSEHLEIKA-EGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
A0A6J1EYA9 uncharacterized protein LOC1114373189.9e-83100Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
A0A6J1JZ13 uncharacterized protein LOC1114910061.7e-7996.84Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSS LILNYDGQDD+KASKSFRFSFPTPSPQRQEKFVHAIPILTI CFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSR PRKL DF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G35470.1 unknown protein9.3e-2547.02Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSP-SSPLILNYDGQD--DEKASKSFRFSFP-TPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQ
        MQR SL S  SKLH +G G K D    DD K    SP SS   ++YD  +  D K  +      P   + Q+QEK VH IPILT+ CF+ILY+ S++PSQ
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSP-SSPLILNYDGQD--DEKASKSFRFSFP-TPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQ

Query:  SDLAQFHGFKRPSEHLEIKAE-GDELIVPKKGNILAIQ-SLRNLKEIE----KSHSLRSRTPRKLGDF
        SDLAQF+GF RPS+HLE   E GDE+    + + L+I+ S+RNL+E E    KS   R  + RK  DF
Subjt:  SDLAQFHGFKRPSEHLEIKAE-GDELIVPKKGNILAIQ-SLRNLKEIE----KSHSLRSRTPRKLGDF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGGCAATCTCTAGGTTCACCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCCAAATCGGATGCAGTTCCGGCCGACGATCAGAAGCGCAACAAGCACTCTCC
ATCTTCTCCTTTAATTCTCAACTACGACGGACAAGACGACGAGAAAGCCTCTAAATCCTTCCGATTCTCATTTCCAACGCCTTCTCCTCAGCGGCAGGAGAAGTTCGTTC
ATGCTATCCCTATCCTCACCATTTTCTGCTTCCTCATCCTTTACATCTTCTCGCACAGTCCTTCGCAGTCAGATTTGGCTCAGTTTCATGGATTCAAGCGTCCTTCAGAA
CATTTAGAAATCAAAGCCGAAGGAGACGAACTTATCGTACCGAAGAAAGGCAACATCCTAGCGATTCAAAGTCTCCGTAACCTAAAAGAGATCGAAAAATCACATTCTCT
GAGATCTCGCACTCCGAGGAAACTCGGCGATTTCTAA
mRNA sequenceShow/hide mRNA sequence
AAACGTCACGAGGCCCAAACGGAAAACACACACAAAAAGTTTATCACGGTACTGACCTCATTTCAGTGAGCAACATCGCTTCTCTCTCTACTTCTCTCTGTCTCTCTCTA
CGATGCAAAGGCAATCTCTAGGTTCACCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCCAAATCGGATGCAGTTCCGGCCGACGATCAGAAGCGCAACAAGCACTCT
CCATCTTCTCCTTTAATTCTCAACTACGACGGACAAGACGACGAGAAAGCCTCTAAATCCTTCCGATTCTCATTTCCAACGCCTTCTCCTCAGCGGCAGGAGAAGTTCGT
TCATGCTATCCCTATCCTCACCATTTTCTGCTTCCTCATCCTTTACATCTTCTCGCACAGTCCTTCGCAGTCAGATTTGGCTCAGTTTCATGGATTCAAGCGTCCTTCAG
AACATTTAGAAATCAAAGCCGAAGGAGACGAACTTATCGTACCGAAGAAAGGCAACATCCTAGCGATTCAAAGTCTCCGTAACCTAAAAGAGATCGAAAAATCACATTCT
CTGAGATCTCGCACTCCGAGGAAACTCGGCGATTTCTAAACTCCGCATTACCGATTCTCTAACCTTCCGGTAAAATTTCACCGACCTCGTTTTCGCCTCACGGCTTCTCA
TGCCGGCGCGTGTTCCTCCCGTAACTATTTTTTAAATTAAAAGCTTCTGTTCATCAAATACTCCGTCAGATTAAATTGTTCTATTCCTTTTCTTTTACTTTTTCAATTTT
TTGTTTGCCTCTGCTAGCGCCGGTGGCACTTCTGTAACTTAATACAAACAAAGAATGAATAAATTGTCAGTTTATCAGAAAGCAAAACCATGACGCGCCGCTCAATTACC
GGCGCGTCGGAGATGAAAATGGAATCCAGCTGCAATATACTCTGTTATTTTCGATTTTCCGAATCGGACCGTTATGGCATTGAGAGAAGGGCCGAAACGCCAGCTGGAAA
ATGCTGTAGTCGCTGACGGTATCAGGTTCTTTCTATCAAATTTATTTTTAAGCCCTCCATTTATTGCCTATTTAGTTTTGTGGTTGCCCCTCCACATATCTCCTCTAGCT
TTTGTGATTTTCTTCGATGGGTTTATTATTAAAATAAAATTAGTAATATAATTGAGGCTGGGTGTCGGTAGATACTTTTATTTTGATAATTCTGTTCCTTACCGGACAAG
GGACCAACGGGTCCCCATTTAATGAATAGCATTAC
Protein sequenceShow/hide protein sequence
MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLAQFHGFKRPSE
HLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF