CuGenDBv2

Gene ID	CmoCh02G017400
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Transcription initiation factor IIF subunit alpha
Genome location	Cmo_Chr02:9920135..9926051
RNA-Seq Expression	CmoCh02G017400
Synteny	CmoCh02G017400
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0001096 - TFIIF-class transcription factor complex binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0008168 - methyltransferase activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
InterPro domains	IPR008851 - Transcription initiation factor IIF, alpha subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6606328.1 Transcription initiation factor IIF subunit alpha, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-300

99.11

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Query:  RLRRNLHQLTLLLQIYGGGAMSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGL
        RLRRNLHQ TLLLQIYGGGAMSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGL
Subjt:  RLRRNLHQLTLLLQIYGGGAMSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGL

Query:  PNFSKKRNAENKWSLYKEGLQGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKM
        PNFSKKRNAENKWSLYKEGLQGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKM
Subjt:  PNFSKKRNAENKWSLYKEGLQGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKM

Query:  KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDD
        KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEG RGG+HDLDDD
Subjt:  KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDD

Query:  DIEKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVA
        DI+KGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEE+DDDDDAEEESGGTPVA
Subjt:  DIEKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVA

Query:  PSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEI
        PSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEI
Subjt:  PSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEI

Query:  RAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        RAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  RAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_022931161.1 transcription initiation factor IIF subunit alpha-like isoform X1 [Cucurbita moschata]

3.6e-292

100

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Query:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
        MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
Subjt:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP
        TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP

Query:  APSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFK
        APSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFK
Subjt:  APSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFK

Query:  ARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        ARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  ARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_022996347.1 transcription initiation factor IIF subunit alpha-like isoform X1 [Cucurbita maxima]

1.5e-285

98.15

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Query:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
        MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
Subjt:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEK-GDDWEHEEIFTDDDE
        GPAAFGEVEKFDDKDS+GATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGG+HDLDDDDIE  GDDWEHEEIFTDDDE
Subjt:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEK-GDDWEHEEIFTDDDE

Query:  TTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEE--DDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSP
        TTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRR+GGLNDSDGEEE  DDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSP
Subjt:  TTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEE--DDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSP

Query:  SKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVA
        SKPAPSGSAKGT STAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEG+STSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVA
Subjt:  SKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVA

Query:  KFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        KFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  KFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_023532767.1 transcription initiation factor IIF subunit alpha-like isoform X1 [Cucurbita pepo subsp. pepo]

8.6e-286

98.15

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Query:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
        M LDLLLKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
Subjt:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDKDSVGATGRGRRKPTSD+NEGNVSDRGE DEEEEAARKNRLGLNKKGGGDDDDEEGPRGG+HDLDDDDIEKGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGE-EEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSK
        TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLL+RTGGLNDSDGE ++DDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSK
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGE-EEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSK

Query:  PAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKF
        PAPSGSAKGT STAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKF
Subjt:  PAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKF

Query:  KARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        KARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  KARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_038888042.1 transcription initiation factor IIF subunit alpha isoform X1 [Benincasa hispida]

2.0e-274

94.43

Show/hide

Query:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
        MS DL+LKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGATVTRLIREYNVRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDK+ VG +GRGRRKPT DENEGNVSDRGEEDEEEEA RKNRLGLNKKGGGDDDDEEGPRGG+HDLDDDDIEKGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP
        TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG E+DDDDDD +E++GGTPV PSKQKD VKEEAAANSPSKP
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP

Query:  APSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFK
         PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDE VSTS+STASKGA A VKTEPAS SGPVTEEEIRAVLRQRTPVTTQDLVAKFK
Subjt:  APSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFK

Query:  ARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        ARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  ARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LCA6 Transcription initiation factor IIF subunit alpha

1.3e-274

94.06

Show/hide

Query:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
        MS DLLLK SCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGATVTRLIREYNVRAS+S+DKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
Subjt:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
        QGRQL+DALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDK++VG +GRGRRK T DENEGNVSDRGEEDEEEEAARKNRLGL+KKGGGDDDDEEGPRGG+HDLDDDDIEKGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP
        TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG E+DDDDDD +E++GGTPV PSKQKD VKEEAAANSPSKP
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP

Query:  APSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFK
         PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESK+TDEGV TS+STASKGA ASVKTEP+S SGPVTEEEIRAVLRQRTPVTTQDLVAKFK
Subjt:  APSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFK

Query:  ARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        ARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  ARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A1S4DWR2 Transcription initiation factor IIF subunit alpha

1.4e-273

93.88

Show/hide

Query:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
        MS DLLLKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGATVTRLIREYNVRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
Subjt:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAE KMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDK++VG +GRGRRK T DENEGNVSDRGEEDEEEEAARKNRLGL+KKGGGDDDDEEGPRGG+HDLDDDDIEKGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP
        TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG E+D+DDDD +E++GGTPV PSKQKD VKEEAAANSPSKP
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP

Query:  APSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFK
         PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE K TDEGV TS+STASKGA ASVKTEP+S SGPVTEEEIRAVLRQRTPVTTQDLVAKFK
Subjt:  APSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFK

Query:  ARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        ARLR+ EDKNAFAEILRRISRIQK NGGPSYVVLRKPED
Subjt:  ARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1E3E1 Transcription initiation factor IIF subunit alpha

8.2e-266

91.67

Show/hide

Query:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
        MS DLLLKPSCSGCGS+T+LYGSNCKHMTLCL CGKTMAENKGKCYDCGATVTRLIREYNVRAS+SSDKNYFIGRFMSGLPNFS+KRNAENKWSLYKEGL
Subjt:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
        QGRQL+DALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDKD+VGA+GRGRRK T DENEGN SDRGEEDEEEEAARKNRLGLNKK  GDDDDEEGPRGG+HD+DDDDIEKGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP
        TAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG E+DDDDDD EE+ GGTPV  SKQKD VKEEAAA+SPSKP
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP

Query:  APSGSAKGTPSTAKTAKGKRK-NGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKF
         PSGS+KGTPS+ K +KGKRK NG+DVKPS+ PPKK+KTET+SKSTDEGVSTS+STASKGA ASVKTE A  SGPVTEEEIRAVLRQRTPVTTQDLVAKF
Subjt:  APSGSAKGTPSTAKTAKGKRK-NGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKF

Query:  KARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        KARLRS EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  KARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1ESX1 Transcription initiation factor IIF subunit alpha

1.8e-292

100

Show/hide

Query:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
        MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
Subjt:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET
        GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET
Subjt:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDET

Query:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP
        TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP
Subjt:  TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKP

Query:  APSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFK
        APSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFK
Subjt:  APSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFK

Query:  ARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        ARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  ARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1K1N5 Transcription initiation factor IIF subunit alpha

7.1e-286

98.15

Show/hide

Query:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
        MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
Subjt:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
        QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEK-GDDWEHEEIFTDDDE
        GPAAFGEVEKFDDKDS+GATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGG+HDLDDDDIE  GDDWEHEEIFTDDDE
Subjt:  GPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEK-GDDWEHEEIFTDDDE

Query:  TTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEE--DDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSP
        TTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRR+GGLNDSDGEEE  DDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSP
Subjt:  TTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEE--DDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSP

Query:  SKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVA
        SKPAPSGSAKGT STAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEG+STSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVA
Subjt:  SKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVA

Query:  KFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        KFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  KFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

SwissProt top hits

e value

%identity

Alignment

Q54WV4 General transcription factor IIF subunit 1

2.2e-10

26.18

Show/hide

Query:  KNRPWLLEDETGQSQFQGHLEGSQ-SATYYLLVLQGK-EFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKF
        K  PW LED  G + +QG++EG+Q S+ Y+L + Q      A+P   WYNF    +++ LT EEAE+ MK + +  D +   + K      +  G  E  
Subjt:  KNRPWLLEDETGQSQFQGHLEGSQ-SATYYLLVLQGK-EFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKF

Query:  DDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDETTAPDREEREDL
          K          R    D N    ++  ++ ++  A R+ R     +G G+D D         D DDD    GD        T +DE    + EE ED+
Subjt:  DDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDETTAPDREEREDL

Query:  APEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEES-------GGTPVAPSKQKDAVKEEAAANSPSKPAPSG
                E+K+  + + ++N+ E  L+    +        GG    D E++D+DD+D +++         G   A      +VK+E      SK +   
Subjt:  APEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEES-------GGTPVAPSKQKDAVKEEAAANSPSKPAPSG

Query:  SAKGTPSTAKTAKGK-RKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARL
          K   S+ K+ + K +KN  D    +   KK+K E  S    +  S S+    +        +P     P TEE I+ VL++   V + DL+  FK  L
Subjt:  SAKGTPSTAKTAKGK-RKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARL

Query:  RSHEDKNAFAEILRRISRIQKTNG
        ++ ++K  F  ++  ++R+ + NG
Subjt:  RSHEDKNAFAEILRRISRIQKTNG

Q9SU25 Transcription initiation factor IIF subunit alpha

1.6e-181

66.97

Show/hide

Query:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL
        MS  L L  SC GCGS ++LYGS+C+HMTLCL+CG+TMA+NK KC++CG  VTRLIREYNVRA++ +DKNYFIGRF++GLPNF  K+ +ENKWSL K+  
Subjt:  MSLDLLLKPSCSGCGSTTELYGSNCKHMTLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN
        QGRQ TDA REK KN+PW+LEDETGQ Q+QGHLEGSQSATYYLLV+Q KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKNR+KTADGY+RWMMKAA+N
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASN

Query:  GPAAFGEVEKFDDKDSVGAT---GRGRRKPT-SDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTD
        GPA FGEV+  ++K+S G +   GRGR+K +  DE EGNVSDRG+EDEEEEA+RK+RLGLN+K   DDDDEEGPRGG+ D+DDDDIEKGDDWEHEEIFTD
Subjt:  GPAAFGEVEKFDDKDSVGAT---GRGRRKPT-SDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTD

Query:  DDETTAPDREERED-LAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAAN
        DDE    D EERED LAPE+PAPPEIKQDE+DE+ E E EGGLSKSGKELKKLL +  GL++SD  E+DDDD D EEE+    V  SKQK+A KEE   N
Subjt:  DDETTAPDREERED-LAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAAN

Query:  SPSKPAPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPAS--------ASGPVTEEEIRAVLR
        +P+KPAPSG  +GTP  AK +KGKRK  +G+  KPSS+  KK+KTE + KS+ +    +  + S     +VK EPAS        A+GPVTE+EIRAVL 
Subjt:  SPSKPAPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPAS--------ASGPVTEEEIRAVLR

Query:  QRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRK
        ++  VTTQDLV++FKARL++ EDKNAFA ILR+IS+IQK  G  ++VVLR+
Subjt:  QRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRK

Arabidopsis top hits

e value

%identity

Alignment

AT4G12610.1 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors

1.7e-117

65.27

Show/hide

Query:  LQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGAT---GRGRRKPT-SDENEGNVSDRGE
        +Q KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKNR+KTADGY+RWMMKAA+NGPA FGEV+  ++K+S G +   GRGR+K +  DE EGNVSDRG+
Subjt:  LQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGAT---GRGRRKPT-SDENEGNVSDRGE

Query:  EDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEEDEDEENEGEGGLSK
        EDEEEEA+RK+RLGLN+K   DDDDEEGPRGG+ D+DDDDIEKGDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDE+DE+ E E EGGLSK
Subjt:  EDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEEDEDEENEGEGGLSK

Query:  SGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKT
        SGKELKKLL +  GL++SD  E+DDDD D EEE+    V  SKQK+A KEE   N+P+KPAPSG  +GTP  AK +KGKRK  +G+  KPSS+  KK+KT
Subjt:  SGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKT

Query:  ETESKSTDEGVSTSRSTASKGAAASVKTEPAS--------ASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPS
        E + KS+ +    +  + S     +VK EPAS        A+GPVTE+EIRAVL ++  VTTQDLV++FKARL++ EDKNAFA ILR+IS+IQK  G  +
Subjt:  ETESKSTDEGVSTSRSTASKGAAASVKTEPAS--------ASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPS

Query:  YVVLRK
        +VVLR+
Subjt:  YVVLRK

AT4G12610.2 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors

1.7e-117

65.27

Show/hide

Query:  LQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGAT---GRGRRKPT-SDENEGNVSDRGE
        +Q KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKNR+KTADGY+RWMMKAA+NGPA FGEV+  ++K+S G +   GRGR+K +  DE EGNVSDRG+
Subjt:  LQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGAT---GRGRRKPT-SDENEGNVSDRGE

Query:  EDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEEDEDEENEGEGGLSK
        EDEEEEA+RK+RLGLN+K   DDDDEEGPRGG+ D+DDDDIEKGDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDE+DE+ E E EGGLSK
Subjt:  EDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEEDEDEENEGEGGLSK

Query:  SGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKT
        SGKELKKLL +  GL++SD  E+DDDD D EEE+    V  SKQK+A KEE   N+P+KPAPSG  +GTP  AK +KGKRK  +G+  KPSS+  KK+KT
Subjt:  SGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKT

Query:  ETESKSTDEGVSTSRSTASKGAAASVKTEPAS--------ASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPS
        E + KS+ +    +  + S     +VK EPAS        A+GPVTE+EIRAVL ++  VTTQDLV++FKARL++ EDKNAFA ILR+IS+IQK  G  +
Subjt:  ETESKSTDEGVSTSRSTASKGAAASVKTEPAS--------ASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPS

Query:  YVVLRK
        +VVLR+
Subjt:  YVVLRK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCATGTCCCTGCTATGAAACATGGGCAAATGTCCTGTGCGCTGATGTTTTTCTTTGTGTTTCGACTGCGATTTTCTCAAAATTTTCGTCGCTCGCTTCATCTTCTCC
TCTGTGTTCTTTTCGACATCTCTCAAATTTTTCTGTCTGTAACCTTAGTCGCTTTGTTAGATCGCTTAATTACTGTAGATTGAGGAGAAATTTGCACCAATTGACCCTGC
TTCTGCAAATTTACGGGGGTGGGGCAATGTCATTGGATTTGCTGCTGAAGCCGTCGTGCAGTGGATGCGGATCCACGACGGAGTTGTATGGGAGCAATTGCAAGCACATG
ACGTTGTGCTTGAGATGTGGCAAAACTATGGCTGAGAATAAGGGCAAATGTTACGACTGTGGTGCTACTGTTACTCGCTTAATAAGAGAATACAATGTTCGAGCGAGTTC
AAGTAGTGACAAGAACTACTTCATTGGTCGGTTCATGAGTGGGCTGCCAAACTTTTCGAAGAAAAGAAATGCCGAGAATAAATGGTCTCTTTACAAGGAAGGTCTACAAG
GACGCCAGCTTACTGATGCCCTGCGGGAAAAGTACAAGAATAGACCCTGGCTCTTGGAAGATGAAACTGGTCAATCTCAATTCCAAGGACATCTTGAGGGTTCACAATCA
GCAACATATTACTTGCTTGTATTGCAAGGAAAGGAATTTACTGCCATTCCTGCAGGTTCTTGGTACAACTTCAACAAAGTGGCACAGTATAAGCAACTTACATTGGAGGA
GGCAGAAGAGAAAATGAAGAACCGAAAGAAGACAGCAGATGGATATGAAAGATGGATGATGAAAGCTGCAAGTAATGGTCCTGCGGCATTTGGTGAAGTTGAGAAGTTTG
ATGACAAAGATAGTGTTGGTGCTACTGGCAGGGGACGCAGAAAACCTACTAGTGACGAGAATGAAGGTAATGTTTCAGATAGGGGAGAAGAAGATGAAGAAGAAGAGGCA
GCAAGGAAGAACAGATTGGGACTCAACAAAAAGGGTGGTGGTGATGATGATGATGAGGAAGGCCCTAGGGGAGGTAACCATGACTTGGATGATGATGATATCGAGAAAGG
AGATGATTGGGAGCATGAAGAGATTTTTACCGATGATGATGAAACTACTGCTCCAGATCGTGAAGAAAGGGAGGATTTAGCCCCTGAAGTTCCAGCACCTCCAGAGATTA
AACAGGATGAAGAAGACGAGGACGAAGAAAATGAAGGAGAGGGGGGGCTCAGCAAATCTGGGAAAGAGTTGAAGAAATTGCTTAGACGTACTGGGGGGCTTAATGATTCA
GATGGAGAGGAGGAGGACGACGACGACGACGATGCGGAAGAGGAGAGCGGTGGCACTCCAGTTGCGCCTTCAAAGCAGAAGGATGCAGTTAAAGAAGAAGCTGCAGCCAA
CAGTCCCTCAAAACCAGCTCCTTCTGGATCTGCTAAGGGAACCCCTTCTACTGCAAAGACAGCAAAGGGGAAAAGAAAAAATGGCGAGGATGTGAAACCATCCAGTGCAC
CTCCAAAGAAAATGAAAACAGAGACGGAATCAAAGTCGACAGATGAAGGCGTGTCTACTTCTAGAAGTACAGCCTCGAAAGGTGCAGCAGCATCAGTCAAAACAGAACCA
GCATCCGCTTCTGGACCCGTTACCGAGGAAGAAATTAGGGCTGTTTTGCGACAAAGGACACCTGTAACTACACAGGATCTTGTTGCAAAATTCAAAGCAAGACTACGATC
TCACGAGGACAAGAATGCTTTTGCTGAAATACTGAGGAGAATTTCAAGGATTCAAAAGACGAATGGAGGACCAAGCTATGTTGTGTTGAGAAAACCTGAAGACTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MACPCYETWANVLCADVFLCVSTAIFSKFSSLASSSPLCSFRHLSNFSVCNLSRFVRSLNYCRLRRNLHQLTLLLQIYGGGAMSLDLLLKPSCSGCGSTTELYGSNCKHM
TLCLRCGKTMAENKGKCYDCGATVTRLIREYNVRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGLQGRQLTDALREKYKNRPWLLEDETGQSQFQGHLEGSQS
ATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEA
ARKNRLGLNKKGGGDDDDEEGPRGGNHDLDDDDIEKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDS
DGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEP
ASASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

CmoCh02G017400 (gene) of Cucurbita moschata (Rifu) v1 genome