; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh02G017410 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G017410
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionC2H2-like zinc finger protein
Genome locationCmo_Chr02:9927223..9927741
RNA-Seq ExpressionCmoCh02G017410
SyntenyCmoCh02G017410
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606329.1 Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. sororia]9.6e-8694.19Show/hide
Query:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA
        MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR+SDYSSSS+   SSRPLSVFAG+QQLHHPAILPHP+YIAA
Subjt:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA

Query:  HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL
        HGA+LHCFPN+QQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDE+HVLNWQRSIKKDKEKEQKLDLSLHL
Subjt:  HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL

XP_022931139.1 protein LATE FLOWERING [Cucurbita moschata]1.2e-91100Show/hide
Query:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA
        MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA
Subjt:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA

Query:  HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL
        HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL
Subjt:  HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL

XP_022996351.1 protein LATE FLOWERING-like [Cucurbita maxima]1.6e-8594.19Show/hide
Query:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA
        MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR+SDYSSSS+   SSRPLSVFAGNQQLHHPAILPHP+YIAA
Subjt:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA

Query:  HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL
        HG NLHCFPN+QQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDE++VLNWQRSIKKDKEKEQKLDLSLHL
Subjt:  HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL

XP_023532770.1 protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]9.6e-8694.19Show/hide
Query:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA
        MEDEEQPL VAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR+SDYSSSS+   SSRPLSVFAG+QQLHHPAILPHP+YIAA
Subjt:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA

Query:  HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL
        HGANLHCFPN+QQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDE+HVLNWQRSIKKDKEKEQKLDLSLHL
Subjt:  HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL

XP_038888938.1 protein LATE FLOWERING [Benincasa hispida]3.7e-5365.41Show/hide
Query:  MEDEEQPLQVAESSS--VEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYS---SSSSSSLSSRPLSVFAGNQQLHHPAILPHP
        ME EE+  QVAE+++  VEMEETP+R+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKR+SDYS   SS  S   + P  VF  + Q HHP +LP P
Subjt:  MEDEEQPLQVAESSS--VEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYS---SSSSSSLSSRPLSVFAGNQQLHHPAILPHP

Query:  VYIAAHGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRY-QCGEDEDHVLNWQRSIKK-------DKEKEQKLDLSLHL
        VYIA HG NLHCFPNNQQ+ Y         E+MVY GGVC+ NRY QCG DE+++LNW+RSIKK       DKEKEQKLDLSLHL
Subjt:  VYIAAHGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRY-QCGEDEDHVLNWQRSIKK-------DKEKEQKLDLSLHL

TrEMBL top hitse value%identityAlignment
A0A0A0LE19 C2H2-type domain-containing protein2.0e-4966.05Show/hide
Query:  MEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAAHGANLHCFPNNQQVFYD
        MEE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKR+ DYS S  S   +    VFA +QQ HHP +LPHPVYIA HGANLHCFPNNQQ+ Y 
Subjt:  MEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAAHGANLHCFPNNQQVFYD

Query:  GLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKK-------DKEKEQKLDLSLHL
                E+MV+ GGVC  NRY   +DE+++LNW+R+IKK       DKEKEQKLDLSLHL
Subjt:  GLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKK-------DKEKEQKLDLSLHL

A0A1S3BIU8 protein LATE FLOWERING-like1.2e-4961.9Show/hide
Query:  MEDEEQPLQVAESSS---------VEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPA-
        ME EE   +V E  +         +EMEETPSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKR+ DYS S  S  S+    VFA +QQ HHPA 
Subjt:  MEDEEQPLQVAESSS---------VEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPA-

Query:  ILPHPVYIAAHGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKK-------DKEKEQKLDLSLHL
        +LPHPVYIA HGANLHCFPNNQQ+ Y         E+MV+ GGVCS NRY   +DE+++LNW+R+IK        DKEKEQKLDLSLHL
Subjt:  ILPHPVYIAAHGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKK-------DKEKEQKLDLSLHL

A0A5A7VIQ7 Protein LATE FLOWERING-like1.2e-4967.48Show/hide
Query:  MEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPA-ILPHPVYIAAHGANLHCFPNNQQVFY
        MEETPSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKR+ DYS S  S  S+    VFA +QQ HHPA +LPHPVYIA HGANLHCFPNNQQ+ Y
Subjt:  MEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPA-ILPHPVYIAAHGANLHCFPNNQQVFY

Query:  DGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKK-------DKEKEQKLDLSLHL
                 E+MV+ GGVCS NRY   +DE+++LNW+R+IK        DKEKEQKLDLSLHL
Subjt:  DGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKK-------DKEKEQKLDLSLHL

A0A6J1ETH7 protein LATE FLOWERING5.7e-92100Show/hide
Query:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA
        MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA
Subjt:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA

Query:  HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL
        HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL
Subjt:  HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL

A0A6J1K4H5 protein LATE FLOWERING-like8.0e-8694.19Show/hide
Query:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA
        MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKR+SDYSSSS+   SSRPLSVFAGNQQLHHPAILPHP+YIAA
Subjt:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA

Query:  HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL
        HG NLHCFPN+QQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDE++VLNWQRSIKKDKEKEQKLDLSLHL
Subjt:  HGANLHCFPNNQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL

SwissProt top hitse value%identityAlignment
Q39263 Zinc finger protein 48.4e-0850Show/hide
Query:  AESSSVEMEE-----TPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRL
        +ESS+ E ++        R+F C +C RKF +SQALGGHQNAHK+ERT  ++A R+
Subjt:  AESSSVEMEE-----TPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRL

Q39266 Zinc finger protein 79.9e-0936.84Show/hide
Query:  ESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLS--------DYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAAHGA
        ++ S + E  P R+F C +C RKF +SQALGGHQNAHK+ERT  ++A  +          Y+ +SSS      L + A +  LHH    P P+    H  
Subjt:  ESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLS--------DYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAAHGA

Query:  NLHCFPNNQQVFYD
            F N   +F+D
Subjt:  NLHCFPNNQQVFYD

Q42485 Zinc finger protein 15.4e-0756.9Show/hide
Query:  RIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFA
        R+F C +C RKF +SQALGGHQNAHK+ERT    AKR   Y      +LSS P S FA
Subjt:  RIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFA

Q9FFX4 Zinc finger protein KNUCKLES3.8e-0873.53Show/hide
Query:  RIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRK
        R+FPC +C RKF TSQALGGHQNAHK+ER A R+
Subjt:  RIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRK

Q9FKA9 Protein LATE FLOWERING8.1e-1938.2Show/hide
Query:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA
        +E EE+     E++  +   +  RIFPCLFCSRKF +SQALGGHQNAHKKERTA R+AKR  D+ +++        L VF  +   HH  IL +P     
Subjt:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA

Query:  HGANLHCFPN---NQQVFYDG---LGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL
          A++ CFP    +  +F      + +    +     GG C   R    +   +V+N       DK K+Q LDLSLHL
Subjt:  HGANLHCFPN---NQQVFYDG---LGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 77.0e-1036.84Show/hide
Query:  ESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLS--------DYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAAHGA
        ++ S + E  P R+F C +C RKF +SQALGGHQNAHK+ERT  ++A  +          Y+ +SSS      L + A +  LHH    P P+    H  
Subjt:  ESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLS--------DYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAAHGA

Query:  NLHCFPNNQQVFYD
            F N   +F+D
Subjt:  NLHCFPNNQQVFYD

AT1G66140.1 zinc finger protein 46.0e-0950Show/hide
Query:  AESSSVEMEE-----TPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRL
        +ESS+ E ++        R+F C +C RKF +SQALGGHQNAHK+ERT  ++A R+
Subjt:  AESSSVEMEE-----TPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRL

AT1G80730.1 zinc-finger protein 13.9e-0856.9Show/hide
Query:  RIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFA
        R+F C +C RKF +SQALGGHQNAHK+ERT    AKR   Y      +LSS P S FA
Subjt:  RIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFA

AT5G14010.1 C2H2 and C2HC zinc fingers superfamily protein2.7e-0973.53Show/hide
Query:  RIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRK
        R+FPC +C RKF TSQALGGHQNAHK+ER A R+
Subjt:  RIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRK

AT5G48890.1 C2H2-like zinc finger protein5.7e-2038.2Show/hide
Query:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA
        +E EE+     E++  +   +  RIFPCLFCSRKF +SQALGGHQNAHKKERTA R+AKR  D+ +++        L VF  +   HH  IL +P     
Subjt:  MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAA

Query:  HGANLHCFPN---NQQVFYDG---LGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL
          A++ CFP    +  +F      + +    +     GG C   R    +   +V+N       DK K+Q LDLSLHL
Subjt:  HGANLHCFPN---NQQVFYDG---LGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATGAAGAACAGCCTTTACAAGTTGCTGAATCCAGCAGTGTTGAAATGGAAGAAACCCCATCAAGAATCTTCCCTTGTTTGTTCTGTTCAAGGAAGTTTCAAAC
CTCTCAAGCTTTAGGAGGTCATCAAAATGCTCACAAGAAAGAGCGCACCGCCGTCAGGAAGGCCAAGCGGCTATCTGATTACTCGTCATCGTCTTCATCGTCATTGTCGT
CACGGCCATTGTCGGTATTTGCAGGCAACCAGCAGCTTCATCATCCAGCTATATTGCCACATCCAGTGTACATTGCAGCTCATGGAGCTAATCTTCATTGTTTCCCCAAT
AACCAACAAGTGTTCTATGATGGCTTGGGAGTTGTTCCCAAGTTTGAGGACATGGTTTACTATGGTGGGGTTTGTTCATACAATAGATATCAATGTGGGGAAGATGAAGA
CCATGTGTTGAATTGGCAGAGAAGCATAAAGAAAGACAAGGAAAAAGAACAAAAACTTGATCTTTCTCTTCATTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATGAAGAACAGCCTTTACAAGTTGCTGAATCCAGCAGTGTTGAAATGGAAGAAACCCCATCAAGAATCTTCCCTTGTTTGTTCTGTTCAAGGAAGTTTCAAAC
CTCTCAAGCTTTAGGAGGTCATCAAAATGCTCACAAGAAAGAGCGCACCGCCGTCAGGAAGGCCAAGCGGCTATCTGATTACTCGTCATCGTCTTCATCGTCATTGTCGT
CACGGCCATTGTCGGTATTTGCAGGCAACCAGCAGCTTCATCATCCAGCTATATTGCCACATCCAGTGTACATTGCAGCTCATGGAGCTAATCTTCATTGTTTCCCCAAT
AACCAACAAGTGTTCTATGATGGCTTGGGAGTTGTTCCCAAGTTTGAGGACATGGTTTACTATGGTGGGGTTTGTTCATACAATAGATATCAATGTGGGGAAGATGAAGA
CCATGTGTTGAATTGGCAGAGAAGCATAAAGAAAGACAAGGAAAAAGAACAAAAACTTGATCTTTCTCTTCATTTATAG
Protein sequenceShow/hide protein sequence
MEDEEQPLQVAESSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAAHGANLHCFPN
NQQVFYDGLGVVPKFEDMVYYGGVCSYNRYQCGEDEDHVLNWQRSIKKDKEKEQKLDLSLHL