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CmoCh02G018150 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G018150
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSignal recognition particle 9 kDa protein
Genome locationCmo_Chr02:10279406..10283155
RNA-Seq ExpressionCmoCh02G018150
SyntenyCmoCh02G018150
Gene Ontology termsGO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process)
GO:0045900 - negative regulation of translational elongation (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsIPR008832 - Signal recognition particle, SRP9 subunit
IPR009018 - Signal recognition particle, SRP9/SRP14 subunit
IPR039432 - SRP9 domain
IPR039914 - Signal recognition particle SRP9


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571487.1 Signal recognition particle 9 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]4.3e-4995.15Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
        MVYIASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFF LMARGP+VDISEVTGK+Q DAQPTKKGRG
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

XP_022146059.1 signal recognition particle 9 kDa protein isoform X1 [Momordica charantia]1.5e-4997.09Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFF LMARGPDVDISEVTGKEQ DAQPTKKGRG
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

XP_022930934.1 signal recognition particle 9 kDa protein-like [Cucurbita moschata]6.0e-51100Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
        MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

XP_022963515.1 signal recognition particle 9 kDa protein [Cucurbita moschata]1.5e-4996.12Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
        MVYIASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFF LMARGPDVDISEVTGK+Q DAQPTKKGRG
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

XP_038887366.1 signal recognition particle 9 kDa protein [Benincasa hispida]3.3e-4995.15Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
        MVY+ASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFF LMARGPDVDISEVTGK+Q DAQPTKKGRG
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

TrEMBL top hitse value%identityAlignment
A0A6J1CY87 Signal recognition particle 9 kDa protein7.2e-5097.09Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFF LMARGPDVDISEVTGKEQ DAQPTKKGRG
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

A0A6J1EY60 Signal recognition particle 9 kDa protein2.9e-51100Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
        MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

A0A6J1HI87 Signal recognition particle 9 kDa protein7.2e-5096.12Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
        MVYIASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFF LMARGPDVDISEVTGK+Q DAQPTKKGRG
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

A0A6J1HSA1 Signal recognition particle 9 kDa protein2.7e-4995.15Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
        MVYIASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKL+NIFF LMARGPDVDISEVTGK+Q DAQPTKKGRG
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

A0A6J1K1A1 Signal recognition particle 9 kDa protein2.9e-51100Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
        MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

SwissProt top hitse value%identityAlignment
O04438 Signal recognition particle 9 kDa protein1.8e-4584.47Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
        MVY+ SW+EFVERSVQLFR DPN+TRY +KYRHC+GKLVLKVTD+RECLKFKTDQAQDAKKMEKLNNIFFALM RGPDVDISEV+GKEQA+ Q  KKGRG
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG

Query:  RKQ
        R+Q
Subjt:  RKQ

P21262 Signal recognition particle 9 kDa protein1.5e-1245.21Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALM
        M    +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL ++TDQAQD KK+EK ++    LM
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALM

P49458 Signal recognition particle 9 kDa protein1.5e-1248.53Show/hide
Query:  SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALM
        +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL +KTDQAQD KK+EK ++    LM
Subjt:  SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALM

Q55GL2 Signal recognition particle 9 kDa protein3.8e-1649.3Show/hide
Query:  VYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFAL
        +YI  WDEF ++S QL+R+DP  TR++ K+RH +GK+VLKVT++   LKF+TD+  D K+++++N++FF L
Subjt:  VYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFAL

Q9SMU7 Signal recognition particle 9 kDa protein1.9e-4787.38Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
        MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AKKMEKLNNIFF LMARGPDVD+SEVTGKEQ + QP KKGRG
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

Arabidopsis top hitse value%identityAlignment
AT3G49100.1 Signal recognition particle, SRP9/SRP14 subunit1.3e-4887.38Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG
        MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AKKMEKLNNIFF LMARGPDVD+SEVTGKEQ + QP KKGRG
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTACATTGCCTCATGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAATTCCACGCGGTACAACATTAAGTATCGGCACTGCGATGGGAA
ACTGGTTCTCAAGGTCACCGATAACCGTGAGTGTCTCAAATTCAAGACTGACCAGGCACAGGATGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCGCACTGATGG
CCCGGGGACCTGATGTGGATATATCGGAAGTCACAGGCAAGGAGCAGGCTGATGCACAGCCAACCAAGAAAGGGAGGGGGAGGAAGCAATGA
mRNA sequenceShow/hide mRNA sequence
AAAAGAAAAAGAAAATGTCAAGCTTTCCCTCTCTTTATTTTCCAACATTTTTCACATCGCGCTTCTGAAATTCATTCCGAAGAAACCAAGGTGGTCGCACGCTCCCTAAA
TTTCCCAAGCTTTCCCGCTCTTTACCTTTTGCCGCAGAGCCATGGTGTACATTGCCTCATGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAAT
TCCACGCGGTACAACATTAAGTATCGGCACTGCGATGGGAAACTGGTTCTCAAGGTCACCGATAACCGTGAGTGTCTCAAATTCAAGACTGACCAGGCACAGGATGCCAA
GAAGATGGAAAAACTCAACAACATATTCTTCGCACTGATGGCCCGGGGACCTGATGTGGATATATCGGAAGTCACAGGCAAGGAGCAGGCTGATGCACAGCCAACCAAGA
AAGGGAGGGGGAGGAAGCAATGACTTCTCATTGAATACTGCACGGATAGATCAACCACATGTGGGAGTGAGATTGGAACCTTTGATGTTTGGTCAAGGTATCTTGGCTTA
ACTTGGATTGACAAAAATTTATAGTTCATGAGATTAAATCATTGTAATTGTTTATTAAGATGTTAAATATTTTGCCTGGTTTTTAAGCATAAAATATTAGTGTTAGAACA
ATTCAACTGTTTCATGAAGGGTTGAATTTCATGTTTGTTTGCATATTCATGATTGTTAGAAACGTATTACAA
Protein sequenceShow/hide protein sequence
MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRGRKQ