; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh02G018360 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G018360
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L24
Genome locationCmo_Chr02:10412030..10420752
RNA-Seq ExpressionCmoCh02G018360
SyntenyCmoCh02G018360
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR003256 - Ribosomal protein L24
IPR005824 - KOW
IPR005825 - Ribosomal protein L24/L26, conserved site
IPR008991 - Translation protein SH3-like domain superfamily
IPR014722 - Ribosomal protein L2, domain 2
IPR041988 - Ribosomal protein L26/L24, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_007050544.1 PREDICTED: 50S ribosomal protein L24 [Theobroma cacao]3.9e-8193.71Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWK+LRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG GHEGGIFTVEAPLH SNVQVVDP TGKPCKVGVRYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
        +KVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMD+VLEK+YD+KTGKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL

XP_022146016.1 uncharacterized protein LOC111015327 [Momordica charantia]1.4e-8397.48Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVG+RYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEK+YDAKTGKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL

XP_022931187.1 uncharacterized protein LOC111437445 [Cucurbita moschata]7.5e-85100Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL

XP_028774016.1 uncharacterized protein LOC114731056 [Prosopis alba]3.0e-8193.08Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWK+LRGDNVMIIRGKDKGETGVIKRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP+H SNVQVVDP TGKPCKVG+RYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
        +KVRVSRG+GASGSIIPRPEILKIRTTPRPTVAGPKDTPMD+VLEK+YDAKTG+GMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL

XP_038889029.1 50S ribosomal protein L24 [Benincasa hispida]1.6e-8296.86Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDP TGKPCKVG+RYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
        SKVRVSRGIGASGSIIPR EILKIRTTPRPTVAGPKDTPMDVVLEK+YDAKTGKGMP+L
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL

TrEMBL top hitse value%identityAlignment
A0A061DRL4 KOW domain-containing protein1.9e-8193.71Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWK+LRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG GHEGGIFTVEAPLH SNVQVVDP TGKPCKVGVRYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
        +KVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMD+VLEK+YD+KTGKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL

A0A6J1CYB5 uncharacterized protein LOC1110153276.9e-8497.48Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVG+RYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEK+YDAKTGKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL

A0A6J1EXQ8 uncharacterized protein LOC1114374453.7e-85100Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL

A0A6J1K0T3 uncharacterized protein LOC1114913633.7e-85100Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL

A0A7J6GLF8 KOW domain-containing protein3.2e-8191.19Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHW+ILRGDNVM+IRGKDKGETGV+KRV+R+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVG++YLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
        +KVRVSRG+GASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVV+EK+YDAKTG+GMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL

SwissProt top hitse value%identityAlignment
A8F2D6 50S ribosomal protein L241.1e-2252.43Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG
        K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

C3PP96 50S ribosomal protein L241.1e-2251.46Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG
        K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

Q4UMR8 50S ribosomal protein L246.5e-2352.43Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG
        K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

Q92GX7 50S ribosomal protein L241.1e-2251.46Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG
        K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

Q9ZCR6 50S ribosomal protein L248.5e-2351.46Show/hide
Query:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG
        K+ +GD V+II GK KG+ G + +V   +N V+V G NLVKKH K  +  EGGI T E+P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

Arabidopsis top hitse value%identityAlignment
AT5G23535.1 KOW domain-containing protein1.5e-7886.79Show/hide
Query:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG
        MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG IKRVIR+QNRVIVEGKNL+KKHIK G  HEGGIFTVEAPLH SNVQVVDP TG+PCKVGV+YLEDG
Subjt:  MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL
        +KVRV+RG G SGSIIPRPEILKIR TPRPT AGPKDTPM+ V E++YDAKTGKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL

AT5G54600.1 Translation protein SH3-like family protein3.1e-1234.58Show/hide
Query:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII
        GD V +I G+DKG+ G + ++    + ++++  NL  KH+K + +G  G I  +EAP+H SNV +         +VG + LEDG KVR     G     I
Subjt:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII

Query:  PRPEILK
         + ++LK
Subjt:  PRPEILK

AT5G54600.2 Translation protein SH3-like family protein1.5e-0632.08Show/hide
Query:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIP
        GD V +I G+DKG+ G + ++  T N  I                  G I  +EAP+H SNV +         +VG + LEDG KVR     G     I 
Subjt:  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIP

Query:  RPEILK
        + ++LK
Subjt:  RPEILK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGGAAGGCTGCTGAAAAGCTTATTAGGCACTGGAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTTATTAAGCG
TGTCATTCGCACTCAAAATCGGGTTATTGTTGAGGGTAAAAACTTGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCTC
TCCATGTATCCAATGTTCAAGTTGTTGATCCAGCAACAGGGAAGCCTTGTAAGGTTGGTGTTAGATATCTTGAAGATGGTTCTAAAGTACGAGTTTCAAGAGGAATTGGA
GCCTCGGGATCTATAATCCCTCGTCCAGAAATCTTAAAGATAAGGACTACTCCCAGACCTACAGTTGCTGGTCCTAAGGATACTCCAATGGATGTGGTACTGGAGAAAAG
TTATGATGCTAAAACCGGGAAGGGCATGCCTGACCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTGGAAGGCTGCTGAAAAGCTTATTAGGCACTGGAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTTATTAAGCG
TGTCATTCGCACTCAAAATCGGGTTATTGTTGAGGGTAAAAACTTGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCTC
TCCATGTATCCAATGTTCAAGTTGTTGATCCAGCAACAGGGAAGCCTTGTAAGGTTGGTGTTAGATATCTTGAAGATGGTTCTAAAGTACGAGTTTCAAGAGGAATTGGA
GCCTCGGGATCTATAATCCCTCGTCCAGAAATCTTAAAGATAAGGACTACTCCCAGACCTACAGTTGCTGGTCCTAAGGATACTCCAATGGATGTGGTACTGGAGAAAAG
TTATGATGCTAAAACCGGGAAGGGCATGCCTGACCTTTAAAAGTTACTTCCAATCAATTCAGAAGACATTTGTTGATGCATGGGCGGCAGCTTGCTTGTATTTCATTTTC
CTTGTTTGTTATGTACTTTTATTTTAGATTAACATTCTTGCGTACTTTTGAAGGAATGACCCTGATCCTTTGATGGTTATGATAAAAGGGAAATAATTTTGTGTCAAATA
CATTTGCTCTTTCCGAGTCTCTTGATAGAGAGAAAAATCCTCTTCGTTTAAA
Protein sequenceShow/hide protein sequence
MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIG
ASGSIIPRPEILKIRTTPRPTVAGPKDTPMDVVLEKSYDAKTGKGMPDL