; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh03G000170 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh03G000170
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed DNA polymerase
Genome locationCmo_Chr03:200306..206081
RNA-Seq ExpressionCmoCh03G000170
SyntenyCmoCh03G000170
Gene Ontology termsGO:0006261 - DNA-dependent DNA replication (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR002298 - DNA polymerase A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022933106.1 uncharacterized protein LOC111439872 isoform X1 [Cucurbita moschata]1.9e-9599.44Show/hide
Query:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD
        MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD
Subjt:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD

Query:  SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
        SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVA+
Subjt:  SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

XP_022933108.1 uncharacterized protein LOC111439872 isoform X2 [Cucurbita moschata]1.9e-9599.44Show/hide
Query:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD
        MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD
Subjt:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD

Query:  SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
        SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVA+
Subjt:  SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

XP_022967800.1 uncharacterized protein LOC111467206 [Cucurbita maxima]8.6e-9397.22Show/hide
Query:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD
        MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLL PKGYCSSSRSVNAAINVDSNATYHGSPASS SQQMLQVQD
Subjt:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD

Query:  SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
        SLSNSPTCKEETEID PSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTA+SLIVDVLEFMPSHVA+
Subjt:  SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

XP_023543411.1 uncharacterized protein LOC111803303 isoform X1 [Cucurbita pepo subsp. pepo]1.8e-9096.13Show/hide
Query:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRF-SSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQ
        MACHHLHTATASASHICRNFL YIFT+KFASPLRF SSSSSSLRIQSPGHHCFPSFSVLL PKGYCSSSRSVNAAINVDSNATYHGSPASS SQQMLQVQ
Subjt:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRF-SSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQ

Query:  DSLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
        DSLSNSPTCKEETEID PSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVA+
Subjt:  DSLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

XP_023543412.1 uncharacterized protein LOC111803303 isoform X2 [Cucurbita pepo subsp. pepo]1.8e-9096.13Show/hide
Query:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRF-SSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQ
        MACHHLHTATASASHICRNFL YIFT+KFASPLRF SSSSSSLRIQSPGHHCFPSFSVLL PKGYCSSSRSVNAAINVDSNATYHGSPASS SQQMLQVQ
Subjt:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRF-SSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQ

Query:  DSLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
        DSLSNSPTCKEETEID PSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVA+
Subjt:  DSLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

TrEMBL top hitse value%identityAlignment
A0A6J1D7Q6 DNA-directed DNA polymerase2.2e-7081.97Show/hide
Query:  MACHHLH--TATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHG-SPASSISQQMLQ
        MACHHLH  TATA+ASHICRNFLGYIFTS++ASPLR  SSSSSL+IQS  HH FPSFS+L  PKGYCSSS  VNAA  VDSNATYHG S ASS SQQMLQ
Subjt:  MACHHLH--TATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHG-SPASSISQQMLQ

Query:  VQDSLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
         QDSL NS   KEE  ID PSDARVMLIDGTSIIYRAY+KLLAKLHHG+LSHADGNGDWVLTIFTA+SLIVDVLEFMPSHVA+
Subjt:  VQDSLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

A0A6J1D847 uncharacterized protein LOC111017796 isoform X22.2e-7081.97Show/hide
Query:  MACHHLH--TATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHG-SPASSISQQMLQ
        MACHHLH  TATA+ASHICRNFLGYIFTS++ASPLR  SSSSSL+IQS  HH FPSFS+L  PKGYCSSS  VNAA  VDSNATYHG S ASS SQQMLQ
Subjt:  MACHHLH--TATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHG-SPASSISQQMLQ

Query:  VQDSLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
         QDSL NS   KEE  ID PSDARVMLIDGTSIIYRAY+KLLAKLHHG+LSHADGNGDWVLTIFTA+SLIVDVLEFMPSHVA+
Subjt:  VQDSLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

A0A6J1EY78 DNA-directed DNA polymerase9.0e-9699.44Show/hide
Query:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD
        MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD
Subjt:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD

Query:  SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
        SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVA+
Subjt:  SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

A0A6J1F3S3 DNA-directed DNA polymerase9.0e-9699.44Show/hide
Query:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD
        MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD
Subjt:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD

Query:  SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
        SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVA+
Subjt:  SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

A0A6J1HVF9 DNA-directed DNA polymerase4.2e-9397.22Show/hide
Query:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD
        MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLL PKGYCSSSRSVNAAINVDSNATYHGSPASS SQQMLQVQD
Subjt:  MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQD

Query:  SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
        SLSNSPTCKEETEID PSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTA+SLIVDVLEFMPSHVA+
Subjt:  SLSNSPTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52050.1 5'-3' exonuclease family protein9.7e-2648.95Show/hide
Query:  QSPGHHCFPSFSVLLP-----PKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQDSLSNSPTCKEE--TEIDRPSDARVMLIDGTSIIYRAYHK
        +S G+ C  + S++ P      K YCSS      A++  SN    GS  +SIS+    V       P   EE        S+ RVMLIDGTSIIYRAY+K
Subjt:  QSPGHHCFPSFSVLLP-----PKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQDSLSNSPTCKEE--TEIDRPSDARVMLIDGTSIIYRAYHK

Query:  LLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
        LLA+L+HGHL+HADGN DWVLTIF+++SL++DVL+F+PSHVA+
Subjt:  LLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

AT3G52050.2 5'-3' exonuclease family protein9.7e-2648.95Show/hide
Query:  QSPGHHCFPSFSVLLP-----PKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQDSLSNSPTCKEE--TEIDRPSDARVMLIDGTSIIYRAYHK
        +S G+ C  + S++ P      K YCSS      A++  SN    GS  +SIS+    V       P   EE        S+ RVMLIDGTSIIYRAY+K
Subjt:  QSPGHHCFPSFSVLLP-----PKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQDSLSNSPTCKEE--TEIDRPSDARVMLIDGTSIIYRAYHK

Query:  LLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
        LLA+L+HGHL+HADGN DWVLTIF+++SL++DVL+F+PSHVA+
Subjt:  LLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

AT3G52050.3 5'-3' exonuclease family protein9.7e-2648.95Show/hide
Query:  QSPGHHCFPSFSVLLP-----PKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQDSLSNSPTCKEE--TEIDRPSDARVMLIDGTSIIYRAYHK
        +S G+ C  + S++ P      K YCSS      A++  SN    GS  +SIS+    V       P   EE        S+ RVMLIDGTSIIYRAY+K
Subjt:  QSPGHHCFPSFSVLLP-----PKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQDSLSNSPTCKEE--TEIDRPSDARVMLIDGTSIIYRAYHK

Query:  LLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
        LLA+L+HGHL+HADGN DWVLTIF+++SL++DVL+F+PSHVA+
Subjt:  LLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

AT3G52050.4 5'-3' exonuclease family protein9.7e-2648.95Show/hide
Query:  QSPGHHCFPSFSVLLP-----PKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQDSLSNSPTCKEE--TEIDRPSDARVMLIDGTSIIYRAYHK
        +S G+ C  + S++ P      K YCSS      A++  SN    GS  +SIS+    V       P   EE        S+ RVMLIDGTSIIYRAY+K
Subjt:  QSPGHHCFPSFSVLLP-----PKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQDSLSNSPTCKEE--TEIDRPSDARVMLIDGTSIIYRAYHK

Query:  LLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
        LLA+L+HGHL+HADGN DWVLTIF+++SL++DVL+F+PSHVA+
Subjt:  LLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI

AT3G52050.5 5'-3' exonuclease family protein9.7e-2648.95Show/hide
Query:  QSPGHHCFPSFSVLLP-----PKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQDSLSNSPTCKEE--TEIDRPSDARVMLIDGTSIIYRAYHK
        +S G+ C  + S++ P      K YCSS      A++  SN    GS  +SIS+    V       P   EE        S+ RVMLIDGTSIIYRAY+K
Subjt:  QSPGHHCFPSFSVLLP-----PKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQDSLSNSPTCKEE--TEIDRPSDARVMLIDGTSIIYRAYHK

Query:  LLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI
        LLA+L+HGHL+HADGN DWVLTIF+++SL++DVL+F+PSHVA+
Subjt:  LLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTGCCACCATCTTCACACTGCGACTGCTAGTGCGTCGCACATTTGCAGAAATTTTCTGGGATACATTTTCACCTCCAAATTTGCTTCTCCTCTTCGTTTC
TCTTCTTCTTCTTCTTCTTTGAGGATACAGTCTCCTGGTCACCATTGTTTTCCCTCTTTCTCCGTTCTGCTACCCCCGAAGGGTTACTGTAGTTCATCTAGAAGT
GTAAATGCTGCGATTAACGTAGATAGCAATGCAACTTATCATGGTAGTCCGGCATCTTCTATTAGCCAGCAAATGCTGCAAGTCCAAGATTCATTATCGAATTCA
CCCACATGCAAAGAAGAAACTGAAATTGATAGACCTTCGGATGCGAGGGTCATGCTCATTGATGGCACATCAATCATTTATAGAGCATACCACAAGCTTTTGGCA
AAGCTGCATCATGGCCATTTATCACATGCGGATGGCAATGGAGATTGGGTGCTAACAATATTTACTGCCATGTCACTTATTGTTGATGTTCTGGAGTTTATGCCT
TCTCATGTGGCGATTTGGGGTTGA
mRNA sequenceShow/hide mRNA sequence
CGTAAACAAGGTTATATATCCGAATCGGGCAGCGGTCGAGGAGGCGCTTCGGTGGTTCTCATGGCCTGCCACCATCTTCACACTGCGACTGCTAGTGCGTCGCAC
ATTTGCAGAAATTTTCTGGGATACATTTTCACCTCCAAATTTGCTTCTCCTCTTCGTTTCTCTTCTTCTTCTTCTTCTTTGAGGATACAGTCTCCTGGTCACCAT
TGTTTTCCCTCTTTCTCCGTTCTGCTACCCCCGAAGGGTTACTGTAGTTCATCTAGAAGTGTAAATGCTGCGATTAACGTAGATAGCAATGCAACTTATCATGGT
AGTCCGGCATCTTCTATTAGCCAGCAAATGCTGCAAGTCCAAGATTCATTATCGAATTCACCCACATGCAAAGAAGAAACTGAAATTGATAGACCTTCGGATGCG
AGGGTCATGCTCATTGATGGCACATCAATCATTTATAGAGCATACCACAAGCTTTTGGCAAAGCTGCATCATGGCCATTTATCACATGCGGATGGCAATGGAGAT
TGGGTGCTAACAATATTTACTGCCATGTCACTTATTGTTGATGTTCTGGAGTTTATGCCTTCTCATGTGGCGATTTGGGGTTGA
Protein sequenceShow/hide protein sequence
MACHHLHTATASASHICRNFLGYIFTSKFASPLRFSSSSSSLRIQSPGHHCFPSFSVLLPPKGYCSSSRSVNAAINVDSNATYHGSPASSISQQMLQVQDSLSNS
PTCKEETEIDRPSDARVMLIDGTSIIYRAYHKLLAKLHHGHLSHADGNGDWVLTIFTAMSLIVDVLEFMPSHVAIWG