CuGenDBv2

Gene ID	CmoCh03G001490
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S28
Genome location	Cmo_Chr03:2110423..2110728
RNA-Seq Expression	CmoCh03G001490
Synteny	CmoCh03G001490
Gene Ontology terms	GO:0000028 - ribosomal small subunit assembly (biological process) GO:0055085 - transmembrane transport (biological process) GO:0006412 - translation (biological process) GO:0006508 - proteolysis (biological process) GO:0006869 - lipid transport (biological process) GO:0030490 - maturation of SSU-rRNA (biological process) GO:0043231 - intracellular membrane-bounded organelle (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0005524 - ATP binding (molecular function) GO:0005319 - lipid transporter activity (molecular function) GO:0140359 - ABC-type transmembrane transporter activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR028626 - Ribosomal protein S28e conserved site IPR012340 - Nucleic acid-binding, OB-fold IPR000289 - Ribosomal protein S28e

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KGN63808.2 hypothetical protein Csa_014218 [Cucumis sativus]

1.2e-25

100

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

RXH76470.1 hypothetical protein DVH24_019358 [Malus domestica]

9.2e-26

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLLWISVTSLFQD
        ME+ IKHA+V+KVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRL + +  +LFQD
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLLWISVTSLFQD

XP_008453374.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo]

1.2e-25

100

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

XP_022134697.1 40S ribosomal protein S28-1-like [Momordica charantia]

1.2e-25

100

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

XP_022922061.1 40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]

1.2e-25

100

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPR2 Uncharacterized protein

5.8e-26

100

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

A0A1S3CD61 40S ribosomal protein S28-1

5.8e-26

100

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

A0A498I065 Uncharacterized protein

4.5e-26

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLLWISVTSLFQD
        ME+ IKHA+V+KVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRL + +  +LFQD
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLLWISVTSLFQD

A0A6J1HTG7 40S ribosomal protein S28-1

5.8e-26

100

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

A0A6N2KMK8 Uncharacterized protein (Fragment)

2.6e-26

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLLWISVTSLFQD
        M+SQIKHAVVVK+MGRTGSRGQVTQVRVKF+DDQNR+IMRNVKGPVREGDILTLLESEREARRL  IS+ ++F +
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLLWISVTSLFQD

SwissProt top hits

e value

%identity

Alignment

P34789 40S ribosomal protein S28-2

1.2e-23

89.06

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

P46302 40S ribosomal protein S28

1.4e-24

90.62

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESEREARRL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

Q6PBK3 40S ribosomal protein S28

1.8e-19

Show/hide

Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

Q90YP3 40S ribosomal protein S28

1.8e-19

Show/hide

Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

Q9SR73 40S ribosomal protein S28-1

3.1e-24

92.19

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

Arabidopsis top hits

e value

%identity

Alignment

AT3G10090.1 Nucleic acid-binding, OB-fold-like protein

2.2e-25

92.19

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein

2.2e-25

92.19

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

AT5G64140.1 ribosomal protein S28

8.3e-25

89.06

Show/hide

Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRL
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAAT
CGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGGAGGTTGCTGTGGATTTCAGTGACT
AGTTTGTTTCAAGACCCTTTGGTTCTGGGGCTGAATTTGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLLWISVTSLFQDPLVLGLNL

CmoCh03G001490 (gene) of Cucurbita moschata (Rifu) v1 genome