; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh03G001950 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh03G001950
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein 5, chloroplastic
Genome locationCmo_Chr03:3253755..3256028
RNA-Seq ExpressionCmoCh03G001950
SyntenyCmoCh03G001950
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013851.1 50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]8.8e-7297.47Show/hide
Query:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE
        MAFLLCSNPLSISLHSSTF  SPSPSPSPSCFPANFA LNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKP AEAKKE
Subjt:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE

Query:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
        DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Subjt:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]1.2e-6086.08Show/hide
Query:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE
        MAFLLCSNPLS SL+SS F  SPSPSPSPSCFP   AA +S+LLM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+PPAEAKKE
Subjt:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE

Query:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
        DV VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Subjt:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN

XP_022949869.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]5.9e-76100Show/hide
Query:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE
        MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE
Subjt:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE

Query:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
        DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Subjt:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN

XP_022967912.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita maxima]3.1e-6994.3Show/hide
Query:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE
        MAFLLCSNPLSISLHSST   SPSPSPSPSCFP NF+ALNSM LMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEID TGETDSNEPKP AEAKKE
Subjt:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE

Query:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
        DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Subjt:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN

XP_023543496.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]2.1e-7397.47Show/hide
Query:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE
        MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFP NFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSF VKAASEIDATGETDSNEPKP AEAKKE
Subjt:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE

Query:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
        DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Subjt:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein3.1e-5480.25Show/hide
Query:  AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKED
        +FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLRN SFVENT S +VKAASE DATGETDS++ +P AEAKKED
Subjt:  AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKED

Query:  VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
        V VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKN
Subjt:  VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN

A0A1S3C2X0 50S ribosomal protein 5, chloroplastic4.1e-5177.07Show/hide
Query:  AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKED
        +FLLCSNPLS S H ST  P         CFP   A  +SMLLMKP GFQPK FNGVRLRN  FVENT S +VKAASE DATGE DS+E +P AEAKKED
Subjt:  AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKED

Query:  VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
        V VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKN
Subjt:  VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic5.7e-6186.08Show/hide
Query:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE
        MAFLLCSNPLS SL+SS F  SPSPSPSPSCFP   AA +S+LLM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+PPAEAKKE
Subjt:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE

Query:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
        DV VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Subjt:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like2.8e-76100Show/hide
Query:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE
        MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE
Subjt:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE

Query:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
        DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Subjt:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like1.5e-6994.3Show/hide
Query:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE
        MAFLLCSNPLSISLHSST   SPSPSPSPSCFP NF+ALNSM LMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEID TGETDSNEPKP AEAKKE
Subjt:  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKE

Query:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
        DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Subjt:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic5.1e-1443.48Show/hide
Query:  LLCSNPLSISLHSSTFSPSPSPSPSPSC-----FPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAK
        LLC N  + +  +S+ S  P P+ +P        P N   L    ++ P   +P+             +N++ FI  AA+  D+       E    +E+K
Subjt:  LLCSNPLSISLHSSTFSPSPSPSPSPSC-----FPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAK

Query:  KED--VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLK
        KE   VSVDKLPLESKL+ER E+  +MKLAKKIRL+RKRLV+KR LRKKG WPPSKMKKL+
Subjt:  KED--VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLK

P27684 50S ribosomal protein 5 alpha, chloroplastic5.1e-1440.94Show/hide
Query:  LSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPL
        LS  L  S+  P  S + S S FP     ++  LL       P     +    P   +   + +   ++  + T   D ++ K     ++ ++SV  LPL
Subjt:  LSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPL

Query:  ESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
        ESKLQ +LEQK +MK+AKKIRLRR RL+RKR LRK+G WPPSKMKKLKN
Subjt:  ESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN

Q9LER7 50S ribosomal protein 5, chloroplastic3.0e-1449.06Show/hide
Query:  LLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVK-AASEIDATGETDSNEPKPPAEAKKEDV
        LLC N L  SL S + S S     SPS     FA  + +L +KP   + K  N V L   S   +    +VK AAS +D        EPK    A    V
Subjt:  LLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVK-AASEIDATGETDSNEPKPPAEAKKEDV

Query:  SVDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
         VDKLPLESK  +    LE + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK KN
Subjt:  SVDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 52.1e-1549.06Show/hide
Query:  LLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVK-AASEIDATGETDSNEPKPPAEAKKEDV
        LLC N L  SL S + S S     SPS     FA  + +L +KP   + K  N V L   S   +    +VK AAS +D        EPK    A    V
Subjt:  LLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVK-AASEIDATGETDSNEPKPPAEAKKEDV

Query:  SVDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
         VDKLPLESK  +    LE + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK KN
Subjt:  SVDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCATCTCTCTCCATTCATCTACATTTTCGCCGTCGCCATCGCCATCGCCGTCGCCGTCATGTTTTCCAGCGAAT
TTCGCCGCCCTGAATTCTATGTTACTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGGGTTCGACTTCGAAACCCCTCCTTCGTTGAAAATACGGTG
TCATTTATTGTCAAGGCTGCATCTGAGATCGATGCTACGGGAGAAACCGACAGTAACGAACCGAAGCCCCCTGCAGAAGCTAAAAAGGAGGATGTTTCAGTTGAC
AAACTTCCATTAGAATCAAAACTGCAAGAGAGGCTGGAGCAGAAGGCAAGGATGAAGTTGGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCGGAAACGC
CATTTGAGGAAGAAAGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGATTTAGAGCTGATTTGCCTTTCTGCTGTGGATAAGCTTTGTTCTATTAAT
GTGTTTGAGAACCCGAACCCGAACCCGTCAATGGATGGAAGCTTTTAG
mRNA sequenceShow/hide mRNA sequence
AAAAACACGATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCATCTCTCTCCATTCATCTACATTTTCGCCGTCGCCATCGCCATCGCCGTCGCCGTCATGTTTT
CCAGCGAATTTCGCCGCCCTGAATTCTATGTTACTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGGGTTCGACTTCGAAACCCCTCCTTCGTTGAA
AATACGGTGTCATTTATTGTCAAGGCTGCATCTGAGATCGATGCTACGGGAGAAACCGACAGTAACGAACCGAAGCCCCCTGCAGAAGCTAAAAAGGAGGATGTT
TCAGTTGACAAACTTCCATTAGAATCAAAACTGCAAGAGAGGCTGGAGCAGAAGGCAAGGATGAAGTTGGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTT
CGGAAACGCCATTTGAGGAAGAAAGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGATTTAGAGCTGATTTGCCTTTCTGCTGTGGATAAGCTTTGT
TCTATTAATGTGTTTGAGAACCCGAACCCGAACCCGTCAATGGATGGAAGCTTTTAGAGTTTGGTATAACTTTTAACCCATTAAGGACTCATCAAAATTTCCGAT
TCAAACCTCCGATCTCTTAATCAAGGACATATGTCTTAACTACTTCCTTAGGATGATTTTTAAGTTACCGATTTGTGTATTATTCAGTTATATGGTTA
Protein sequenceShow/hide protein sequence
MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVD
KLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNDLELICLSAVDKLCSINVFENPNPNPSMDGSF