CuGenDBv2

Gene ID	CmoCh03G002460
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Transmembrane protein 18
Genome location	Cmo_Chr03:3806029..3808959
RNA-Seq Expression	CmoCh03G002460
Synteny	CmoCh03G002460
Gene Ontology terms	GO:0000902 - cell morphogenesis (biological process) GO:0009856 - pollination (biological process) GO:0009987 - cellular process (biological process) GO:0031965 - nuclear membrane (cellular component)
InterPro domains	IPR026721 - Transmembrane protein 18

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7033663.1 Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-44

77.6

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Query:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW
        MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL                           +AGVYFAERINRILSKNW
Subjt:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW

Query:  KNFATQNYFDPNGVFLSTLWSGPLL
        KNFATQNYFDPNGVFLSTLWSGPLL
Subjt:  KNFATQNYFDPNGVFLSTLWSGPLL

XP_022156188.1 transmembrane protein 18 [Momordica charantia]

4.0e-43

75.2

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Query:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW
        MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNFIGFFHAI WKEPWLMGLL                           +AGVYFAERINRILSKNW
Subjt:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW

Query:  KNFATQNYFDPNGVFLSTLWSGPLL
        KNFATQNYFDPNGVFLSTLWSGPLL
Subjt:  KNFATQNYFDPNGVFLSTLWSGPLL

XP_022949841.1 transmembrane protein 18 [Cucurbita moschata]

1.3e-44

77.6

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Query:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW
        MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL                           +AGVYFAERINRILSKNW
Subjt:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW

Query:  KNFATQNYFDPNGVFLSTLWSGPLL
        KNFATQNYFDPNGVFLSTLWSGPLL
Subjt:  KNFATQNYFDPNGVFLSTLWSGPLL

XP_023543279.1 transmembrane protein 18 [Cucurbita pepo subsp. pepo]

3.6e-44

76.8

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Query:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW
        MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWL+GLL                           +AGVYFAERINRILSKNW
Subjt:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW

Query:  KNFATQNYFDPNGVFLSTLWSGPLL
        KNFATQNYFDPNGVFLSTLWSGPLL
Subjt:  KNFATQNYFDPNGVFLSTLWSGPLL

XP_038900756.1 transmembrane protein 18 [Benincasa hispida]

2.4e-43

73.6

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Query:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW
        MEELRSAMEEHMDQMADL+QK+SSELRSG+RPAVDNF+GFFHAIDWKEPWLMGLL                           +AGVYFAERINRILSKNW
Subjt:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW

Query:  KNFATQNYFDPNGVFLSTLWSGPLL
        KNFATQNYFDPNGVFLS LWSGPLL
Subjt:  KNFATQNYFDPNGVFLSTLWSGPLL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LN62 Transmembrane protein 18

5.3e-41

71.2

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Query:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW
        M+ELRS MEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWKEPWLMGLL                           +AGVYFAE IN ILSKNW
Subjt:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW

Query:  KNFATQNYFDPNGVFLSTLWSGPLL
        KNFATQNYFDPNGVFLS LWSGPLL
Subjt:  KNFATQNYFDPNGVFLSTLWSGPLL

A0A5A7VF36 Transmembrane protein 18

9.1e-41

70.4

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Query:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW
        M+ELRSAMEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWKEPWLMGLL                           +AGVYFAE IN+ILSKNW
Subjt:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW

Query:  KNFATQNYFDPNGVFLSTLWSGPLL
        K FATQNYFDPNGVFLS LW GPLL
Subjt:  KNFATQNYFDPNGVFLSTLWSGPLL

A0A6J1DPY2 Transmembrane protein 18

2.0e-43

75.2

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Query:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW
        MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNFIGFFHAI WKEPWLMGLL                           +AGVYFAERINRILSKNW
Subjt:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW

Query:  KNFATQNYFDPNGVFLSTLWSGPLL
        KNFATQNYFDPNGVFLSTLWSGPLL
Subjt:  KNFATQNYFDPNGVFLSTLWSGPLL

A0A6J1GD63 Transmembrane protein 18

6.1e-45

77.6

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Query:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW
        MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL                           +AGVYFAERINRILSKNW
Subjt:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW

Query:  KNFATQNYFDPNGVFLSTLWSGPLL
        KNFATQNYFDPNGVFLSTLWSGPLL
Subjt:  KNFATQNYFDPNGVFLSTLWSGPLL

A0A6J1ISM9 Transmembrane protein 18

6.1e-45

77.6

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Query:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW
        MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL                           +AGVYFAERINRILSKNW
Subjt:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW

Query:  KNFATQNYFDPNGVFLSTLWSGPLL
        KNFATQNYFDPNGVFLSTLWSGPLL
Subjt:  KNFATQNYFDPNGVFLSTLWSGPLL

SwissProt top hits

e value

%identity

Alignment

Q3SZ36 Transmembrane protein 18

3.7e-07

35.8

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Query:  DWKEPWLMGL---------------------------LVAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLL
        DW EPWL+GL                           LV  VY AE IN + + NW+ F+   YFD  G+F+S ++S PLL
Subjt:  DWKEPWLMGL---------------------------LVAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLL

Q3TUD9 Transmembrane protein 18

4.8e-07

35.8

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Query:  DWKEPWLMGL---------------------------LVAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLL
        DW EPWL+GL                           LV  VY AE IN + + NW+ F+   YFD  G+F+S ++S PLL
Subjt:  DWKEPWLMGL---------------------------LVAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLL

Q641M3 Transmembrane protein 18

3.3e-08

34.88

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Query:  FFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLL
        F  ++DW EPWLM LL                           VA VY AE +N + + NW++F+   YFD  G+F+S ++S PLL
Subjt:  FFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLL

Q6DGF8 Transmembrane protein 18

1.7e-07

37.04

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Query:  DWKEPWLMGL---------------------------LVAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLL
        DW EPWL+GL                           LV  VY AE IN + + NW+ FA   YFD  G+F+S ++S PLL
Subjt:  DWKEPWLMGL---------------------------LVAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLL

Q96B42 Transmembrane protein 18

6.3e-07

37.04

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Query:  DWKEPWLMGL---------------------------LVAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLL
        DW EPWLMGL                           LV  VY AE IN   + NW+ F+   YFD  G+F+S ++S PLL
Subjt:  DWKEPWLMGL---------------------------LVAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLL

Arabidopsis top hits

e value

%identity

Alignment

AT1G34350.1 unknown protein

7.1e-38

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Query:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW
        MEE+RSAME+ +D +ADLV+KLS ELR+G +PA DNF+GFFHAIDWKEPW+MGL+                           +AGVYFAE +NR L KNW
Subjt:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKNW

Query:  KNFATQNYFDPNGVFLSTLWSGPLL
        K+F+TQNYFD NGVFLSTLWSGPLL
Subjt:  KNFATQNYFDPNGVFLSTLWSGPLL

AT1G34350.2 unknown protein

1.5e-35

51.33

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Query:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGL----------------------------------------------
        MEE+RSAME+ +D +ADLV+KLS ELR+G +PA DNF+GFFHAIDWKEPW+MGL                                              
Subjt:  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGL----------------------------------------------

Query:  ------LVAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLL
              LVAGVYFAE +NR L KNWK+F+TQNYFD NGVFLSTLWSGPLL
Subjt:  ------LVAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLL

Sequences

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CDS sequence

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ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTCCGTCCGGCTGTCGAT
AATTTCATCGGTTTCTTCCACGCCATTGACTGGAAGGAACCTTGGTTGATGGGGTTATTAGTAGCTGGTGTATATTTTGCTGAGAGAATCAATAGAATCTTGAGC
AAAAACTGGAAGAATTTTGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCCTTTCAACACTCTGGTCTGGGCCACTGCTCTCAGGTGGAAAAGAGCTGAGC
TTCGAAATCGAGCACGACTTTCACAGACTAAAGAAGACTAATCCCAAAGGTGAAGCTTTTTTAGCTTTGATATCTTTTGCTGCTGTGTATCTTATCCTTCTCAGA
GATCGTTGGACCGATGCGAGTACAATGCGAAGAGCGGACTAA

mRNA sequence

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Protein sequence

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MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLVAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLLSGGKELS
FEIEHDFHRLKKTNPKGEAFLALISFAAVYLILLRDRWTDASTMRRAD

CmoCh03G002460 (gene) of Cucurbita moschata (Rifu) v1 genome