CuGenDBv2

Gene ID	CmoCh03G004800
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	Cmo_Chr03:5193657..5196224
RNA-Seq Expression	CmoCh03G004800
Synteny	CmoCh03G004800
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009536 - plastid (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR007645 - RNA polymerase Rpb2, domain 3 IPR015712 - DNA-directed RNA polymerase, subunit 2

Homology

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GenBank top hits

e value

%identity

Alignment

QJR52948.1 RNA polymerase beta subunit [Herpetospermum pedunculosum]

5.5e-45

71.94

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        QVHLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]

5.5e-45

71.94

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        QVHLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

YP_009753166.1 RNA polymerase subunit beta [Trichosanthes truncata]

5.5e-45

71.94

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        QVHLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

YP_009753697.1 RNA polymerase subunit beta [Trichosanthes nervifolia]

5.5e-45

71.94

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        QVHLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

YP_009753781.1 RNA polymerase subunit beta [Trichosanthes pilosa]

5.5e-45

71.94

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        QVHLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

TrEMBL top hits

e value

%identity

Alignment

A0A1S4ETZ9 DNA-directed RNA polymerase subunit beta

2.7e-45

71.94

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        QVHLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta

2.7e-45

71.94

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        QVHLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

A0A218KG28 DNA-directed RNA polymerase subunit beta

2.7e-45

71.94

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        QVHLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

A0A249RZI0 DNA-directed RNA polymerase subunit beta

2.7e-45

71.94

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        QVHLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

A0A6H0ETN6 DNA-directed RNA polymerase subunit beta

2.7e-45

71.94

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        QVHLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

SwissProt top hits

e value

%identity

Alignment

A6MMB4 DNA-directed RNA polymerase subunit beta

8.8e-46

71.22

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLA--KKCGCF---------IYH---QVEM-----NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA   + G +         IY    +V+M     +  EYYMV+ GNSLALN GIQEEQ+VPARYRQEFLTI WE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLA--KKCGCF---------IYH---QVEM-----NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        Q+HLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

Q06H05 DNA-directed RNA polymerase subunit beta

4.0e-46

69.06

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA          +E                    N  EYYMV+ GNSLALN GIQEEQ+VPARYRQEFLTI WE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        Q+HLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

Q4VZP1 DNA-directed RNA polymerase subunit beta

7.2e-48

71.94

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                    +  EYYMV+TGNSLALNPGIQEEQIVPARYRQEFLTIEWE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        QVHLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

Q589C0 DNA-directed RNA polymerase subunit beta

1.0e-46

70.5

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE
        DIHPSHYGRICP DTSEGINVGLIGSLA      +   +E                    +  EYYMVSTGNSLALN GIQEEQ+VPARYRQEFLTI WE
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWE

Query:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        QVHLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  QVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

Q7YJX8 DNA-directed RNA polymerase subunit beta

8.8e-46

69.34

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Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-----------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQV
        DIHPSHYGRICP DTSEGINVGLIGSLA       +  +E                  +  EYYMV+ GNSLALN GIQEEQ+VPARYRQEFLTI WEQ+
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM-----------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQV

Query:  HLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        HLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  HLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

4.5e-45

65.96

Show/hide

Query:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM---------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIE
        DIHPSHYGRICP DTSEGINVGLIGSL+       +  +E                      +  EYYM++ GNSLALN GIQEEQ VPARYRQEFLTI 
Subjt:  DIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEM---------------------NTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIE

Query:  WEQVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR
        WE+VHLRSI PFQYFSIGASLIPFIEHND NRALM SNMQR
Subjt:  WEQVHLRSISPFQYFSIGASLIPFIEHNDVNRALMRSNMQR

Sequences

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CDS sequence

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ATGGACGCATTTGCCCAAATGACACGTCTGAAGGAATTAATGTTGGACTTAGATATCCATCCTAGTCATTATGGACGCATTTGCCCAAATGACACGTCTGAAGGA
ATTAATGTTGGACTTATTGGATCATTAGCAAAAAAGTGCGGATGCTTTATTTATCACCAAGTCGAGATGAATACTATAGAATACTATATGGTATCGACAGGAAAT
TCTTTGGCACTGAATCCAGGTATTCAAGAAGAACAGATTGTTCCAGCTCGATACCGTCAAGAATTCTTAACTATTGAATGGGAACAAGTTCATCTTCGAAGTATT
TCTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTCATTCCTTTTATCGAACATAATGATGTGAATCGTGCTTTAATGAGGTCTAATATGCAACGTCCTCAGCGG
AAATATTATAAGATGGTAAAGGGACAACAGTAA

mRNA sequence

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Protein sequence

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MDAFAQMTRLKELMLDLDIHPSHYGRICPNDTSEGINVGLIGSLAKKCGCFIYHQVEMNTIEYYMVSTGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSI
SPFQYFSIGASLIPFIEHNDVNRALMRSNMQRPQRKYYKMVKGQQ

CmoCh03G004800 (gene) of Cucurbita moschata (Rifu) v1 genome