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CmoCh03G004830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh03G004830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionZinc finger CCCH domain-containing protein 11-like
Genome locationCmo_Chr03:5201374..5208076
RNA-Seq ExpressionCmoCh03G004830
SyntenyCmoCh03G004830
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2617498.1 hypothetical protein F2Q68_00042148 [Brassica cretica]6.6e-1152.27Show/hide
Query:  NRSKTVENYVQSIKQSVQLNPDQMKMAAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        N+SK V+ YVQS+KQSVQ  PD  K+AAK  K++            T+T MTP L+M+WK+KK AER+A  AA  AERA NDR+S R+
Subjt:  NRSKTVENYVQSIKQSVQLNPDQMKMAAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

KAG6603700.1 Zinc finger CCCH domain-containing protein 21, partial [Cucurbita argyrosperma subsp. sororia]7.0e-3779.25Show/hide
Query:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAALAERASNDRLSDRQCLNILANSKPPLGTFCFRQWHSICWHRINGLLLEKGLPLTIMEGLYIRRLLC
        HAKITKTTSTLMTPELYMQWKKKKFAEREACFAALAERASNDRLSDRQ                  QWHSICWH IN LLLEKGLPLTIMEGLYIRRLLC
Subjt:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAALAERASNDRLSDRQCLNILANSKPPLGTFCFRQWHSICWHRINGLLLEKGLPLTIMEGLYIRRLLC

Query:  SLDVYK
        SLDV++
Subjt:  SLDVYK

PQP92987.1 zinc finger CCCH domain-containing protein 11-like [Prunus yedoensis var. nudiflora]4.0e-0864.52Show/hide
Query:  AAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        A K+   E IENQ AK+  TTST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  AAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

PQQ09951.1 zinc finger CCCH domain-containing protein 11 [Prunus yedoensis var. nudiflora]4.0e-0864.52Show/hide
Query:  AAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        A K+   E IENQ AK+  TTST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  AAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

XP_021800197.1 zinc finger CCCH domain-containing protein 21-like isoform X1 [Prunus avium]4.0e-0864.52Show/hide
Query:  AAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        A K+   E IENQ AK+  TTST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  AAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

TrEMBL top hitse value%identityAlignment
A0A314XPV8 Zinc finger CCCH domain-containing protein 11-like1.9e-0864.52Show/hide
Query:  AAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        A K+   E IENQ AK+  TTST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  AAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

A0A314YYW3 Zinc finger CCCH domain-containing protein 111.9e-0864.52Show/hide
Query:  AAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        A K+   E IENQ AK+  TTST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  AAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

A0A498K165 Uncharacterized protein5.7e-0867.27Show/hide
Query:  EGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        E IENQ  K+  TTST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  EGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

A0A540NQA2 Uncharacterized protein5.7e-0867.27Show/hide
Query:  EGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        E IENQ  K+  TTST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  EGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

A0A6P5REB8 zinc finger CCCH domain-containing protein 21-like isoform X11.9e-0864.52Show/hide
Query:  AAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        A K+   E IENQ AK+  TTST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  AAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

SwissProt top hitse value%identityAlignment
Q0JHZ2 Zinc finger CCCH domain-containing protein 113.9e-0643.75Show/hide
Query:  YVQSIKQSVQLNPDQMKMAAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAAL-AERASNDRLSDRQ
        YV   +    L  +  K+A +    + IE+Q  K+   T+T MT +L+M+WK+KK  EREA  AAL AERA NDR+S R+
Subjt:  YVQSIKQSVQLNPDQMKMAAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAAL-AERASNDRLSDRQ

Q9SK74 Zinc finger CCCH domain-containing protein 216.0e-0745Show/hide
Query:  YVQSIKQSVQLNPDQMKMAAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        YV   +    L  +  K   K+   + IEN+ AK+   T+T MTP L+M+WK+KK AER+A  AA  AERA NDR+S R+
Subjt:  YVQSIKQSVQLNPDQMKMAAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

Arabidopsis top hitse value%identityAlignment
AT2G20280.1 Zinc finger C-x8-C-x5-C-x3-H type family protein4.3e-0845Show/hide
Query:  YVQSIKQSVQLNPDQMKMAAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        YV   +    L  +  K   K+   + IEN+ AK+   T+T MTP L+M+WK+KK AER+A  AA  AERA NDR+S R+
Subjt:  YVQSIKQSVQLNPDQMKMAAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAGGAGCAAAACTGTGGAGAACTATGTCCAGAGTATCAAGCAATCGGTTCAGCTCAATCCCGATCAGATGAAAATGGCTGCGAAGGTTTGCAAGATCGAGGGGAT
AGAAAATCAGCATGCCAAGATAACTAAAACAACATCAACCCTCATGACTCCTGAATTATACATGCAATGGAAGAAGAAAAAGTTTGCAGAAAGAGAAGCTTGTTTTGCTG
CACTGGCAGAAAGAGCCTCGAATGATCGTCTGAGTGACCGCCAATGCTTAAACATCCTTGCAAATTCAAAGCCTCCACTTGGAACCTTTTGCTTTAGGCAATGGCACTCC
ATTTGTTGGCACCGTATTAATGGTCTTTTACTAGAGAAGGGTCTGCCACTGACAATAATGGAAGGCTTATATATTCGAAGGCTGCTCTGTTCTCTTGACGTGTACAAATA
A
mRNA sequenceShow/hide mRNA sequence
AACCAGATGGCATATGTAGATTTTGTTTCCGAAAAGTAGATTAAATCGTTTTTTACGCTGATAAGAGACGCCGCCGAAGCAACGATCGAAAAACATGAACAGGAGCAAAA
CTGTGGAGAACTATGTCCAGAGTATCAAGCAATCGGTTCAGCTCAATCCCGATCAGATGAAAATGGCTGCGAAGGTTTGCAAGATCGAGGGGATAGAAAATCAGCATGCC
AAGATAACTAAAACAACATCAACCCTCATGACTCCTGAATTATACATGCAATGGAAGAAGAAAAAGTTTGCAGAAAGAGAAGCTTGTTTTGCTGCACTGGCAGAAAGAGC
CTCGAATGATCGTCTGAGTGACCGCCAATGCTTAAACATCCTTGCAAATTCAAAGCCTCCACTTGGAACCTTTTGCTTTAGGCAATGGCACTCCATTTGTTGGCACCGTA
TTAATGGTCTTTTACTAGAGAAGGGTCTGCCACTGACAATAATGGAAGGCTTATATATTCGAAGGCTGCTCTGTTCTCTTGACGTGTACAAATAATAGAGACATAAGAGA
GTAAGTAAAGCTGATATTGGGCAAAAGAGAATGTGGAAAGAAACAGCAGAACAAGATTGAAGAAGATCTTGCAGTTAACATTATGTTCAGATGGGACTCAGTTTTCAACA
ATGCCACAGTTGATGAACATGGAGATGTCTGTTAAAGCTAAACAAAAGTAAAATAAAAAATTCGATCTTTTCTGACGTTGCTTCCTCCATGCGTCCATTTGGATGGACAA
TGGACAAGTGAGTTCCAACTCATAGTATTAGTAGCTTTGTTGATTAGAATAATAGTATTAGTAG
Protein sequenceShow/hide protein sequence
MNRSKTVENYVQSIKQSVQLNPDQMKMAAKVCKIEGIENQHAKITKTTSTLMTPELYMQWKKKKFAEREACFAALAERASNDRLSDRQCLNILANSKPPLGTFCFRQWHS
ICWHRINGLLLEKGLPLTIMEGLYIRRLLCSLDVYK