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CmoCh03G005530 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh03G005530
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPatatin
Genome locationCmo_Chr03:5512508..5513208
RNA-Seq ExpressionCmoCh03G005530
SyntenyCmoCh03G005530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647663.1 hypothetical protein Csa_003863 [Cucumis sativus]1.5e-3586.67Show/hide
Query:  MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPN
        MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISG+A RRSD +GSFWL+SLTWKWKKRKGNNG+LPN
Subjt:  MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPN

KAG6603769.1 hypothetical protein SDJN03_04378, partial [Cucurbita argyrosperma subsp. sororia]9.9e-4388.89Show/hide
Query:  MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA
        MYKGMSRSRS SEKM G+APLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPN C  +   K+
Subjt:  MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA

XP_011658506.1 uncharacterized protein LOC105436036 [Cucumis sativus]1.5e-3586.67Show/hide
Query:  MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPN
        MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISG+A RRSD +GSFWL+SLTWKWKKRKGNNG+LPN
Subjt:  MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPN

XP_022977336.1 uncharacterized protein LOC111477686 [Cucurbita maxima]2.0e-4389.9Show/hide
Query:  MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA
        MYKGMSRSRSFSEKM G+APLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPN C  +   K+
Subjt:  MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA

XP_038882225.1 uncharacterized protein LOC120073447 [Benincasa hispida]1.5e-3875.22Show/hide
Query:  MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA-
        MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISGDA RRSD KGSFWL+SLTWKWKKRK NNGILPN C  +   K+ 
Subjt:  MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA-

Query:  ----IASMGFLVL
            I   G+ +L
Subjt:  ----IASMGFLVL

TrEMBL top hitse value%identityAlignment
A0A0A0KL84 Uncharacterized protein7.4e-3686.67Show/hide
Query:  MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPN
        MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISG+A RRSD +GSFWL+SLTWKWKKRKGNNG+LPN
Subjt:  MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPN

A0A5D3CRM5 Uncharacterized protein3.7e-3586.67Show/hide
Query:  MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPN
        MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFT  E+ERHGSS  I G+A RRSD KGSFWL+SLTWKWKKRK NNGILPN
Subjt:  MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPN

A0A6J1EEE9 uncharacterized protein LOC1114335711.3e-3569.03Show/hide
Query:  MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA-
        MY+G+SRS SFSE+MG VAPLAIGTRGT+GSLVMKEIEYFTK E+ERHG SQR+SGDASRRSD K SFWL+SL+WKWKKR+ NNGILPN C  +   K+ 
Subjt:  MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA-

Query:  ----IASMGFLVL
            I   G+ +L
Subjt:  ----IASMGFLVL

A0A6J1IJL8 uncharacterized protein LOC1114776869.6e-4489.9Show/hide
Query:  MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA
        MYKGMSRSRSFSEKM G+APLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPN C  +   K+
Subjt:  MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA

A0A6J1KQQ8 uncharacterized protein LOC1114974072.8e-3568.14Show/hide
Query:  MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA-
        MY+G+SRS SFSE+MG VAPLAIGTRGT+GSLVMKEIEYFTK E+ERHG SQR+SGDASRRSD + SFWL+SL+WKWKKR+ NNGILPN C  +   K+ 
Subjt:  MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKA-

Query:  ----IASMGFLVL
            I   G+ +L
Subjt:  ----IASMGFLVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G21780.1 unknown protein1.9e-0738.1Show/hide
Query:  APLAIGTRGTVGSLVMKEIEYFTKFEV------ERHGSSQRISGDASR--RSDCKGSFWLVSLTWKWKKRK---GNNGILPNNC
        AP+AIGTRGT+GSLV KEI+YF  F         R G+S+       +  RS  +   W     W+ KKR+   G     P+ C
Subjt:  APLAIGTRGTVGSLVMKEIEYFTKFEV------ERHGSSQRISGDASR--RSDCKGSFWLVSLTWKWKKRK---GNNGILPNNC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTCTCTGAGAAAATGGGTGGTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGAT
TGAGTACTTCACCAAGTTTGAGGTGGAACGCCATGGCAGCTCTCAGAGGATAAGTGGAGATGCTTCGAGGAGAAGCGATTGTAAGGGAAGCTTTTGGCTTGTGTCCTTGA
CTTGGAAGTGGAAGAAGAGAAAAGGCAATAATGGGATTCTCCCCAACAATTGCAGGCTGTTGAATTGTCAAAAAGCAATCGCTTCAATGGGATTCCTGGTTTTGAACATT
GGGACCTTGAAAATGGGATATAATGGAGATACTAGCTTGTTTTGTGTTCATACATGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTCTCTGAGAAAATGGGTGGTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGAT
TGAGTACTTCACCAAGTTTGAGGTGGAACGCCATGGCAGCTCTCAGAGGATAAGTGGAGATGCTTCGAGGAGAAGCGATTGTAAGGGAAGCTTTTGGCTTGTGTCCTTGA
CTTGGAAGTGGAAGAAGAGAAAAGGCAATAATGGGATTCTCCCCAACAATTGCAGGCTGTTGAATTGTCAAAAAGCAATCGCTTCAATGGGATTCCTGGTTTTGAACATT
GGGACCTTGAAAATGGGATATAATGGAGATACTAGCTTGTTTTGTGTTCATACATGGTAG
Protein sequenceShow/hide protein sequence
MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNNCRLLNCQKAIASMGFLVLNI
GTLKMGYNGDTSLFCVHTW