; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh03G006500 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh03G006500
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein L11
Genome locationCmo_Chr03:5891716..5892183
RNA-Seq ExpressionCmoCh03G006500
SyntenyCmoCh03G006500
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070180 - large ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000911 - Ribosomal protein L11/L12
IPR006519 - Ribosomal protein L11, bacterial-type
IPR020783 - Ribosomal protein L11, C-terminal
IPR020784 - Ribosomal protein L11, N-terminal
IPR036769 - Ribosomal protein L11, C-terminal domain superfamily
IPR036796 - Ribosomal protein L11/L12, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603860.1 hypothetical protein SDJN03_04469, partial [Cucurbita argyrosperma subsp. sororia]1.2e-7998.06Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNA TQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS R
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR

Query:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
        PGHVVASTLTVKHIYDIAKVKQSDP+CQYMPLESICKSIIGTANSMGIKVVKELD
Subjt:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD

KAG7034038.1 mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-8098.71Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS R
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR

Query:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
        PGHVVASTLTVKHIYDIAKVKQSDP+CQYMPLESICKSIIGTANSMGIKVVKELD
Subjt:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD

XP_022950615.1 54S ribosomal protein L19, mitochondrial-like [Cucurbita moschata]1.3e-81100Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR

Query:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
        PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
Subjt:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD

XP_022977323.1 54S ribosomal protein L19, mitochondrial-like [Cucurbita maxima]6.4e-8198.71Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR

Query:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
        PGHVVASTLT+KHIYDIAKVKQSDP+CQYMPLESICKSIIGTANSMGIKVVKELD
Subjt:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD

XP_038901904.1 54S ribosomal protein L19, mitochondrial [Benincasa hispida]3.5e-7996.77Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS R
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR

Query:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
        PGHVVASTL+VKHIY+IAKVKQSDP+CQYMPLESICKSIIGTANSMGIKVVKEL+
Subjt:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD

TrEMBL top hitse value%identityAlignment
A0A1S3BMZ5 54S ribosomal protein L19, mitochondrial3.2e-7894.84Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
        MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS R
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR

Query:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
        PGHVVASTL+VKHIY+IAKVKQSDP+CQYMPLESICKSIIGTANSMGIKV+ EL+
Subjt:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD

A0A5A7T9U7 54S ribosomal protein L193.2e-7894.84Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
        MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS R
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR

Query:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
        PGHVVASTL+VKHIY+IAKVKQSDP+CQYMPLESICKSIIGTANSMGIKV+ EL+
Subjt:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD

A0A6J1BU21 54S ribosomal protein L19, mitochondrial6.5e-7995.48Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
        MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGI+SGS R
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR

Query:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
        PGHVVASTL++KHIY+IAKVKQSDP+CQYMPLESICKSIIGTANSMGIKVVKELD
Subjt:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD

A0A6J1GG89 54S ribosomal protein L19, mitochondrial-like6.3e-82100Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR

Query:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
        PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
Subjt:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD

A0A6J1IPM9 54S ribosomal protein L19, mitochondrial-like3.1e-8198.71Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR

Query:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
        PGHVVASTLT+KHIYDIAKVKQSDP+CQYMPLESICKSIIGTANSMGIKVVKELD
Subjt:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD

SwissProt top hitse value%identityAlignment
A7HWQ0 50S ribosomal protein L111.6e-2947.18Show/hide
Query:  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLT
        + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQK +   P+ V ITAF D +F F +K+P  +++LKKAA + SGS  PG   A T+T
Subjt:  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLT

Query:  VKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVK
        V    +IA+ K +D       L+   K I G+A SMG++VV+
Subjt:  VKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVK

Q2RQU9 50S ribosomal protein L117.0e-3046.48Show/hide
Query:  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLT
        + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQ  +P  P+ V ITA+ D TF +  K+P +T++LKKAAGI  GS  PG   A T+T
Subjt:  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLT

Query:  VKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVK
        ++ + DIA+ K  D       +E+  + ++G+A SMG++VV+
Subjt:  VKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVK

Q9UTK2 54S ribosomal protein L19, mitochondrial1.0e-3350.37Show/hide
Query:  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYD
        I+L VPAG A P PP+GPALG   L  + FCK+FNART  + P+TP+   IT     TF FT+ +P  +W + K   +E GS  P H +   L++KHIY+
Subjt:  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYD

Query:  IAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVV
        IAK+K +DP  Q + L S+CKS+IGTA SMG+KVV
Subjt:  IAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVV

Q9VFJ2 39S ribosomal protein L11, mitochondrial1.6e-2938.71Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR
        + +LK+ + R    + ++  +PAG A   PP+GP LGQ  +N+ AFCKDFNA+T + K   P+   I+   D +++  +  P  T++LK+AAGI+ G+  
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGR

Query:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
        PG  VA  +T+KH+Y+IA +K  DP    + ++ +C+ +I  A + GIKVV+E+D
Subjt:  PGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD

Q9Y3B7 39S ribosomal protein L11, mitochondrial1.6e-2944.97Show/hide
Query:  LTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVAS
        L +  V   IR  V AG A P PP+GP LGQ  +++  FCK+FN RT+  K   P+   I    D TFE  +  P+V+++LK AAGIE G+ + G  VA 
Subjt:  LTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVAS

Query:  TLTVKHIYDIAKVKQSDP--FCQYMPLESICKSIIGTANSMGIKVVKEL
         +T+KH+Y+IA++K  D     Q +PL S+ +SIIG+A S+GI+VVK+L
Subjt:  TLTVKHIYDIAKVKQSDP--FCQYMPLESICKSIIGTANSMGIKVVKEL

Arabidopsis top hitse value%identityAlignment
AT1G32990.1 plastid ribosomal protein l116.5e-2343.57Show/hide
Query:  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLT
        + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   K    + V IT F D +F F +K+P  +  L KAAG+E GS  P       +T
Subjt:  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLT

Query:  VKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKV
        +  +  IA  K  D  C    +ES  + I GTA +MGI +
Subjt:  VKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKV

AT4G35490.1 mitochondrial ribosomal protein L111.1e-7384.42Show/hide
Query:  ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRP
        A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDN+FEFTVKSP+V+WY+KKAAG++ GS RP
Subjt:  ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRP

Query:  GHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD
        GH+  +TL+V+H+Y+IAKVKQ+DPFCQYMPLESICKSIIGTANSMGIK+V++L+
Subjt:  GHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD

AT5G51610.1 Ribosomal protein L11 family protein2.9e-0734.18Show/hide
Query:  DNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKV
        D +F F +K+P  ++ L KAAG++ GS  P  +    +T+  +  IA+VK  +  C    + S  ++I GTA +MGI +
Subjt:  DNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCCGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGG
TCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAATA
CCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCGGCCGCCCTGGCCATGTGGTCGCCTCTACGCTCACT
GTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTTTTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGG
AATTAAGGTTGTTAAGGAATTGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCCGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGG
TCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAATA
CCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCGGCCGCCCTGGCCATGTGGTCGCCTCTACGCTCACT
GTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTTTTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGG
AATTAAGGTTGTTAAGGAATTGGATTAA
Protein sequenceShow/hide protein sequence
MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLT
VKHIYDIAKVKQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD